TReFID ~ Control C ~ Analysis Results
 

The table below summarizes the results of a TReFID analysis based on the SSU tRFs calculated for an artificial bacterial community of Azospirillum brasilense, Escherichia coli, and Rhizobium leguminosarum. This in silico analysis provided 537 sequences from the SSU database (version A). The relatedness of these sequences is shown in the phylogram of Figure 5; details on the analysis parameters are given on the same page.

The column titled "Out of range" in the table below gives the number of restriction enzymes (out of thirteen employed) that have no restriction site in the 500 nt downstream of the 63f primer binding site. Therefore, the actual number of enzymes contributing to the identification process is 13 less the number in this column.

The "No match" column similarly gives the number of enzymes . Basically, the lower the numbers in both columns are the more probable reliable...

The maximum score for a given sequence is equal to the number of restriction enzymes providing a tRF, because the highest possible score for any match is 1.00. The similarity value is the ratio of actual score sum and the maximum score.

The results are sorted by the accuracy of the ...

However, the 541 sequences represent only 168 different tRF profiles or "polygons". Actually, the results list contained 208 sequences from Salomonella enterica with the same tRF profiles. But even without S. enterica, each tRF profile in the results list comprised about two sequences on average. The reasoning behind this is: First, the relative high redundancy in the database results in multiple hits for the same species (e.g. 56 sequences of E. coli). Second, closely related species cannot be differentiated on grounds of their tRF profiles (e. g. E. coli [link to trf pattern] and E. albertii [link to trf pattern]). However, the accuracy of the TReFID approach is limited by the same tRF profiles occuring in species of different genera (e. g. Dickeya dadantii [link to trf pattern] and Erwinia chrysanthemi [link to trf pattern]) and by the same species being represented by different tRF patterns. For example, the 56 E. coli sequences contained in the rersults list yield 18 different tRF patterns. On the other hand, the actual differences between these patterns are small in most cases (e.g. one nt difference in tRF length or one missing/additional restriction site for a single enzyme).

A graphical representation of the sequences in the results list is given in Figure 5.

details on the scoring provided for selected entries (see links in the table below)

Primary / secondary tRFs

 

 

> Patterns

> Phylogeny

 

 

Download TReFID results file for Control C (TAB delimited text, e. g. for import in Microsoft Excel)

Download FASTA file of all these sequences (plain text, e. g. for ClustalX)

 

 

Back to Figure 5

 

Project Title: In_Silico
Date: Tuesday, 11.Nov.03 (10:53)
Sample: Database_Excerpt
Primers: 63f-JOE
Enzymes: 13 (AluI, Bme1390I, Bsh1236I, Cfr13I, HaeIII, Hin6I, HinfI, MboI, MspI, RsaI, TaiI, TaqI, TasI)
Notes: mixture of three strains (Abr Sp7 + Eco O157:H7 + Rle WSM1698)
Database: SSU_21669entries.TReFID.org
  (CRX-SERVER\\C:\TReFID v1.1\TReFID v1.1\source\)
Database version: 09-16-2004, 00:00:00
Analysis date: 11-13-2004, 01:36:53
Interval: 0.50 %
RE fraction: 0.69
  (9 of 13 enzymes are required to give a score)
Results: 541
Avg. score sum: 8.93

(top of page)

 

No.

Accession

Organism

Out of range

No match

Score sum

Max. score

% Similarity

1

AF525840

uncultured soil bacterium

1

0

12.00

12.00

100 %

2

U38469

Rhizobium tropici USDA 2676, synonyms: CIAT 166

1

0

12.00

12.00

100 %

3

AF260274

Rhizobium tropici SEMIA 4080

1

0

12.00

12.00

100 %

4

AY117671

Rhizobium tropici R05

1

0

12.00

12.00

100 %

5

AY117670

Rhizobium tropici R01

1

0

12.00

12.00

100 %

6

AF260280

Rhizobium tropici PRSFG 7

1

0

12.00

12.00

100 %

7

AF260279

Rhizobium tropici PRSFG 5

1

0

12.00

12.00

100 %

8

AF260294

Rhizobium tropici PRSFG 27

1

0

12.00

12.00

100 %

9

AF260293

Rhizobium tropici PRSFG 26

1

0

12.00

12.00

100 %

10

AF260292

Rhizobium tropici PRSFG 25

1

0

12.00

12.00

100 %

11

AF260290

Rhizobium tropici PRSFG 23

1

0

12.00

12.00

100 %

12

AF260277

Rhizobium tropici PRSFG 2

1

0

12.00

12.00

100 %

13

AY117624

Rhizobium tropici PRF93

1

0

12.00

12.00

100 %

14

AF260275

Rhizobium tropici PRF54

1

0

12.00

12.00

100 %

15

AF260298

Rhizobium tropici PRF35

1

0

12.00

12.00

100 %

16

AY117623

Rhizobium tropici PRF34

1

0

12.00

12.00

100 %

17

AY117622

Rhizobium tropici PRF233

1

0

12.00

12.00

100 %

18

AY117618

Rhizobium tropici ISP59

1

0

12.00

12.00

100 %

19

AF480572

Rhizobium tropici

1

0

12.00

12.00

100 %

20

AF286362

Rhizobium sp. PRY71 PRY71

1

0

12.00

12.00

100 %

21

AY210708

Rhizobium sp. Db4-14 Db4-14

1

0

12.00

12.00

100 %

22

AF533683

Rhizobium leguminosarum WSM1698

1

0

12.00

12.00

100 %

23

AF260278

Rhizobium tropici PRSFG 3

1

0

11.50

12.00

96 %

24

AF260276

Rhizobium tropici PRSFG 1

1

0

11.50

12.00

96 %

25

AF286363

Rhizobium sp. PRY73 PRY73

1

0

11.50

12.00

96 %

26

AF441730

alpha proteobacterium Kaza-35 Kaza-35

1

0

11.00

12.00

92 %

27

AY166841

Rhizobium tropici UPRM8033

1

0

11.00

12.00

92 %

28

AF423251

uncultured soil bacterium

2

0

11.00

11.00

100 %

29

AF525841

uncultured soil bacterium

2

0

11.00

11.00

100 %

30

AF525838

uncultured soil bacterium

2

0

11.00

11.00

100 %

31

AF525837

uncultured soil bacterium

2

0

11.00

11.00

100 %

32

AF445090

uncultured bacterium

2

0

11.00

11.00

100 %

33

AF407723

uncultured bacterium

2

0

11.00

11.00

100 %

34

AF467359

uncultured alpha proteobacterium

2

0

11.00

11.00

100 %

35

AY162066

alpha proteobacterium PII_GH3.2.E12 PII_GH3.2.E12

2

0

11.00

11.00

100 %

36

AY162064

alpha proteobacterium PII_GH2.2.D12 PII_GH2.2.D12

2

0

11.00

11.00

100 %

37

AY162059

alpha proteobacterium PII_GH1.2.A6 PII_GH1.2.A6

2

0

11.00

11.00

100 %

38

AF250353

Sinorhizobium xinjiangense Rx22

2

0

11.00

11.00

100 %

39

AF250355

Sinorhizobium xinjiangense CCBAU830804

2

0

11.00

11.00

100 %

40

AF250354

Sinorhizobium xinjiangense CCBAU110

2

0

11.00

11.00

100 %

41

AF250377

Sinorhizobium xinjiangense CCBAU 830844

2

0

11.00

11.00

100 %

42

AF357225

Sinorhizobium sp. 9702-M4 9702-M4

2

0

11.00

11.00

100 %

43

AF533685

Sinorhizobium meliloti WSM1702

2

0

11.00

11.00

100 %

44

AF533684

Sinorhizobium meliloti WSM1701

2

0

11.00

11.00

100 %

45

AF260284

Rhizobium tropici PRSFG 14

2

0

11.00

11.00

100 %

46

AY117612

Rhizobium tropici ISP25

2

0

11.00

11.00

100 %

47

AY148434

Rhizobium sp. JH1 JH1

2

0

11.00

11.00

100 %

48

AY148433

Rhizobium sp. AB3 AB3

2

0

11.00

11.00

100 %

49

AJ440750

Gram-negative bacterium DM 2 Bacteria

2

0

11.00

11.00

100 %

50

AJ440749

Gram-negative bacterium DM 1 Bacteria

2

0

11.00

11.00

100 %

(top of page)

 

No.

Accession

Organism

Out of range

No match

Score sum

Max. score

% Similarity

51

AY040360

Ensifer adhaerens LMG 20582

2

0

11.00

11.00

100 %

52

AJ420775

Ensifer adhaerens LMG 20582

2

0

11.00

11.00

100 %

53

AJ420774

Ensifer adhaerens HAMBI 1631

2

0

11.00

11.00

100 %

54

AJ420773

Ensifer adhaerens 5D19

2

0

11.00

11.00

100 %

55

AY118223

Azospirillum sp. DA6-2-2 DA6-2-2

2

0

11.00

11.00

100 %

56

AY324110

Azospirillum brasilense ATCC 29145

2

0

11.00

11.00

100 %

57

AY096165

uncultured bacterium

1

1

11.00

12.00

92 %

58

AB074635

uncultured alpha proteobacterium

1

1

11.00

12.00

92 %

59

AF441727

alpha proteobacterium Kaza-29 Kaza-29

1

1

11.00

12.00

92 %

60

AF406659

Agrobacterium tumefaciens A10-B12

1

1

11.00

12.00

92 %

61

U89832

Rhizobium tropici CIAT 899

1

0

10.00

12.00

83 %

62

Z29617

Azospirillum brasilense

2

0

10.00

11.00

91 %

63

AF423294

uncultured soil bacterium

3

0

10.00

10.00

100 %

64

AF423247

uncultured soil bacterium

3

0

10.00

10.00

100 %

65

AB064879

uncultured gamma proteobacterium

3

0

10.00

10.00

100 %

66

AF481814

uncultured bacterium

3

0

10.00

10.00

100 %

67

AF371936

uncultured bacterium

3

0

10.00

10.00

100 %

68

AF371931

uncultured bacterium

3

0

10.00

10.00

100 %

69

AF371849

uncultured bacterium

3

0

10.00

10.00

100 %

70

AF371848

uncultured bacterium

3

0

10.00

10.00

100 %

71

AF371847

uncultured bacterium

3

0

10.00

10.00

100 %

72

AY135915

uncultured bacterium

3

0

10.00

10.00

100 %

73

AJ487022

uncultured bacterium

3

0

10.00

10.00

100 %

74

AJ487021

uncultured bacterium

3

0

10.00

10.00

100 %

75

AJ409001

uncultured bacterium

3

0

10.00

10.00

100 %

76

AY039431

soil bacterium S74D1 Bacteria S74D1

3

0

10.00

10.00

100 %

77

AF260289

Rhizobium tropici PRSFG 22

3

0

10.00

10.00

100 %

78

AF260285

Rhizobium tropici PRSFG 15

3

0

10.00

10.00

100 %

79

AB088415

Ochrobactrum anthropi NH-15

3

0

10.00

10.00

100 %

80

AY082448

Escherichia sp. 253b 253b

3

0

10.00

10.00

100 %

81

X80731

Escherichia coli PK3

3

0

10.00

10.00

100 %

82

X80730

Escherichia coli PK3

3

0

10.00

10.00

100 %

83

X80729

Escherichia coli PK3

3

0

10.00

10.00

100 %

84

X80728

Escherichia coli PK3

3

0

10.00

10.00

100 %

85

X80727

Escherichia coli PK3

3

0

10.00

10.00

100 %

86

X80723

Escherichia coli PK3

3

0

10.00

10.00

100 %

87

X80722

Escherichia coli PK3

3

0

10.00

10.00

100 %

88

X80721

Escherichia coli PK3

3

0

10.00

10.00

100 %

89

AB035926

Escherichia coli O157:H7 RIMD0509952

3

0

10.00

10.00

100 %

90

AB035925

Escherichia coli O157:H7 RIMD0509952

3

0

10.00

10.00

100 %

91

AB035924

Escherichia coli O157:H7 RIMD0509952

3

0

10.00

10.00

100 %

92

AB035923

Escherichia coli O157:H7 RIMD0509952

3

0

10.00

10.00

100 %

93

AB035922

Escherichia coli O157:H7 RIMD0509952

3

0

10.00

10.00

100 %

94

AB035921

Escherichia coli O157:H7 RIMD 0509952

3

0

10.00

10.00

100 %

95

AB035920

Escherichia coli O157:H7 RIMD 0509952

3

0

10.00

10.00

100 %

96

AY513502

Escherichia coli O157:H7 O157:H7

3

0

10.00

10.00

100 %

97

AY186041

Escherichia coli MP2

3

0

10.00

10.00

100 %

98

X80732

Escherichia coli MC4100

3

0

10.00

10.00

100 %

99

AJ516045

Escherichia coli LE/28

3

0

10.00

10.00

100 %

100

AY186040

Escherichia coli EBI5

3

0

10.00

10.00

100 %

(top of page)

 

No.

Accession

Organism

Out of range

No match

Score sum

Max. score

% Similarity

101

AB075685

Escherichia coli C28

3

0

10.00

10.00

100 %

102

AF403733

Escherichia coli C2

3

0

10.00

10.00

100 %

103

X80724

Escherichia coli ATCC 25922

3

0

10.00

10.00

100 %

104

AY319393

Escherichia coli 5.2

3

0

10.00

10.00

100 %

105

AF076037

Escherichia coli

3

0

10.00

10.00

100 %

106

Z83205

Escherichia coli

3

0

10.00

10.00

100 %

107

Z83204

Escherichia coli

3

0

10.00

10.00

100 %

108

V00348

Escherichia coli

3

0

10.00

10.00

100 %

109

J01695

Escherichia coli

3

0

10.00

10.00

100 %

110

E05133

Escherichia coli

3

0

10.00

10.00

100 %

111

AY078065

Escherichia coli

3

0

10.00

10.00

100 %

112

AJ567617

Escherichia coli

3

0

10.00

10.00

100 %

113

AJ567606

Escherichia coli

3

0

10.00

10.00

100 %

114

AJ567540

Escherichia coli

3

0

10.00

10.00

100 %

115

AF511430

Escherichia coli

3

0

10.00

10.00

100 %

116

AJ508775

Escherichia albertii type strain: LMG 20976

3

0

10.00

10.00

100 %

117

AF463533

Citrobacter sp. TSA-1 TSA-1

3

0

10.00

10.00

100 %

118

AJ514240

Citrobacter freundii

3

0

10.00

10.00

100 %

119

AF025371

Citrobacter farmeri CDC 2991-81

3

0

10.00

10.00

100 %

120

AF423283

uncultured soil bacterium

2

1

10.00

11.00

91 %

121

AF423262

uncultured soil bacterium

2

1

10.00

11.00

91 %

122

AF423250

uncultured soil bacterium

2

1

10.00

11.00

91 %

123

AF423229

uncultured soil bacterium

2

1

10.00

11.00

91 %

124

AF423223

uncultured soil bacterium

2

1

10.00

11.00

91 %

125

AF423210

uncultured soil bacterium

2

1

10.00

11.00

91 %

126

AB074608

uncultured gamma proteobacterium

2

1

10.00

11.00

91 %

127

AJ487029

uncultured bacterium

2

1

10.00

11.00

91 %

128

AY133104

uncultured alpha proteobacterium

2

1

10.00

11.00

91 %

129

AF529121

uncultured alpha proteobacterium

2

1

10.00

11.00

91 %

130

AJ318921

Sinorhizobium sp. MH37 MH37

2

1

10.00

11.00

91 %

131

AF452129

Sinorhizobium morelense LMG 20571

2

1

10.00

11.00

91 %

132

AJ420776

Sinorhizobium morelense LMG 20571

2

1

10.00

11.00

91 %

133

AF364067

Sinorhizobium kummerowiae CCBAU 71714

2

1

10.00

11.00

91 %

134

AY150050

Roseomonas genomospecies 6 ATCC 49961

2

1

10.00

11.00

91 %

135

AY150046

Roseomonas fauriae ATCC 49958

2

1

10.00

11.00

91 %

136

AF025372

Citrobacter koseri CDC 3613-63

2

1

10.00

11.00

91 %

137

AB049110

Azospirillum sp. B506 B506

2

1

10.00

11.00

91 %

138

AF508093

Agrobacterium tumefaciens

2

1

10.00

11.00

91 %

139

AY133084

uncultured gamma proteobacterium

1

2

10.00

12.00

83 %

140

AJ534667

uncultured alpha proteobacterium

1

2

10.00

12.00

83 %

141

AF508094

Agrobacterium tumefaciens

1

2

10.00

12.00

83 %

142

AY144207

uncultured alpha proteobacterium

4

0

9.00

9.00

100 %

143

AY394631

uncultured Escherichia sp

4

0

9.00

9.00

100 %

144

AY043584

forest soil bacterium 1S2.C7 Bacteria 1S2.C7

4

0

9.00

9.00

100 %

145

AF415707

Salmonella enterica l16

4

0

9.00

9.00

100 %

146

AF415832

Salmonella enterica 99

4

0

9.00

9.00

100 %

147

AF415732

Salmonella enterica 98

4

0

9.00

9.00

100 %

148

AF415710

Salmonella enterica 97

4

0

9.00

9.00

100 %

149

AF415866

Salmonella enterica 95

4

0

9.00

9.00

100 %

150

AF415709

Salmonella enterica 93

4

0

9.00

9.00

100 %

(top of page)

 

No.

Accession

Organism

Out of range

No match

Score sum

Max. score

% Similarity

151

AF415906

Salmonella enterica 92

4

0

9.00

9.00

100 %

152

AF415905

Salmonella enterica 91

4

0

9.00

9.00

100 %

153

AF415904

Salmonella enterica 90

4

0

9.00

9.00

100 %

154

AF415827

Salmonella enterica 9-1

4

0

9.00

9.00

100 %

155

AF415828

Salmonella enterica 9

4

0

9.00

9.00

100 %

156

AF415903

Salmonella enterica 89

4

0

9.00

9.00

100 %

157

AF415902

Salmonella enterica 88

4

0

9.00

9.00

100 %

158

AF415901

Salmonella enterica 87

4

0

9.00

9.00

100 %

159

AF415900

Salmonella enterica 86

4

0

9.00

9.00

100 %

160

AF415899

Salmonella enterica 85

4

0

9.00

9.00

100 %

161

AF415898

Salmonella enterica 84

4

0

9.00

9.00

100 %

162

AF415811

Salmonella enterica 83

4

0

9.00

9.00

100 %

163

AF415810

Salmonella enterica 82

4

0

9.00

9.00

100 %

164

AF415916

Salmonella enterica 80

4

0

9.00

9.00

100 %

165

AF415826

Salmonella enterica 8-1

4

0

9.00

9.00

100 %

166

AF415917

Salmonella enterica 8

4

0

9.00

9.00

100 %

167

AF415915

Salmonella enterica 79

4

0

9.00

9.00

100 %

168

AF415809

Salmonella enterica 78

4

0

9.00

9.00

100 %

169

AF415808

Salmonella enterica 77

4

0

9.00

9.00

100 %

170

AF415854

Salmonella enterica 76

4

0

9.00

9.00

100 %

171

AF415706

Salmonella enterica 75

4

0

9.00

9.00

100 %

172

AF415807

Salmonella enterica 74

4

0

9.00

9.00

100 %

173

AF415806

Salmonella enterica 71

4

0

9.00

9.00

100 %

174

AF415860

Salmonella enterica 70

4

0

9.00

9.00

100 %

175

AF415825

Salmonella enterica 7-1

4

0

9.00

9.00

100 %

176

AF415897

Salmonella enterica 7

4

0

9.00

9.00

100 %

177

AF415836

Salmonella enterica 69

4

0

9.00

9.00

100 %

178

AF415708

Salmonella enterica 68

4

0

9.00

9.00

100 %

179

AF415824

Salmonella enterica 67

4

0

9.00

9.00

100 %

180

AF415835

Salmonella enterica 66

4

0

9.00

9.00

100 %

181

AF415913

Salmonella enterica 64

4

0

9.00

9.00

100 %

182

AF415805

Salmonella enterica 63

4

0

9.00

9.00

100 %

183

AF415895

Salmonella enterica 62

4

0

9.00

9.00

100 %

184

AF415731

Salmonella enterica 60-1

4

0

9.00

9.00

100 %

185

AF415804

Salmonella enterica 60

4

0

9.00

9.00

100 %

186

AF415896

Salmonella enterica 6

4

0

9.00

9.00

100 %

187

AF415729

Salmonella enterica 59-1

4

0

9.00

9.00

100 %

188

AF415893

Salmonella enterica 59

4

0

9.00

9.00

100 %

189

AF415728

Salmonella enterica 58-1

4

0

9.00

9.00

100 %

190

AF415803

Salmonella enterica 58

4

0

9.00

9.00

100 %

191

AF415727

Salmonella enterica 57-1

4

0

9.00

9.00

100 %

192

AF415822

Salmonella enterica 57

4

0

9.00

9.00

100 %

193

AF415726

Salmonella enterica 56-1

4

0

9.00

9.00

100 %

194

AF415802

Salmonella enterica 56

4

0

9.00

9.00

100 %

195

AF415892

Salmonella enterica 55-1

4

0

9.00

9.00

100 %

196

AF415801

Salmonella enterica 55

4

0

9.00

9.00

100 %

197

AF415891

Salmonella enterica 54-1

4

0

9.00

9.00

100 %

198

AF415890

Salmonella enterica 54

4

0

9.00

9.00

100 %

199

AF415889

Salmonella enterica 53-1

4

0

9.00

9.00

100 %

200

AF415912

Salmonella enterica 53

4

0

9.00

9.00

100 %

(top of page)

 

No.

Accession

Organism

Out of range

No match

Score sum

Max. score

% Similarity

201

AF415888

Salmonella enterica 52-1

4

0

9.00

9.00

100 %

202

AF415887

Salmonella enterica 52

4

0

9.00

9.00

100 %

203

AF415886

Salmonella enterica 51-1

4

0

9.00

9.00

100 %

204

AF415885

Salmonella enterica 51

4

0

9.00

9.00

100 %

205

AF415821

Salmonella enterica 50-1

4

0

9.00

9.00

100 %

206

AF415800

Salmonella enterica 50

4

0

9.00

9.00

100 %

207

AF415823

Salmonella enterica 5-1

4

0

9.00

9.00

100 %

208

AF415730

Salmonella enterica 5

4

0

9.00

9.00

100 %

209

AF415819

Salmonella enterica 49-1

4

0

9.00

9.00

100 %

210

AF415799

Salmonella enterica 49

4

0

9.00

9.00

100 %

211

AF415798

Salmonella enterica 48

4

0

9.00

9.00

100 %

212

AF415884

Salmonella enterica 47

4

0

9.00

9.00

100 %

213

AF415907

Salmonella enterica 44

4

0

9.00

9.00

100 %

214

AF415831

Salmonella enterica 43

4

0

9.00

9.00

100 %

215

AF415853

Salmonella enterica 42-1

4

0

9.00

9.00

100 %

216

AF415862

Salmonella enterica 42

4

0

9.00

9.00

100 %

217

AF415852

Salmonella enterica 41-1

4

0

9.00

9.00

100 %

218

AF415867

Salmonella enterica 41

4

0

9.00

9.00

100 %

219

AF415851

Salmonella enterica 40-1

4

0

9.00

9.00

100 %

220

AF415861

Salmonella enterica 40

4

0

9.00

9.00

100 %

221

AF415820

Salmonella enterica 4-1

4

0

9.00

9.00

100 %

222

AF415725

Salmonella enterica 4

4

0

9.00

9.00

100 %

223

AF415850

Salmonella enterica 39-1

4

0

9.00

9.00

100 %

224

AF415834

Salmonella enterica 39

4

0

9.00

9.00

100 %

225

AF415849

Salmonella enterica 38-1

4

0

9.00

9.00

100 %

226

AF415848

Salmonella enterica 37-1

4

0

9.00

9.00

100 %

227

AF415847

Salmonella enterica 36-1

4

0

9.00

9.00

100 %

228

AF415705

Salmonella enterica 36

4

0

9.00

9.00

100 %

229

AF415846

Salmonella enterica 35-1

4

0

9.00

9.00

100 %

230

AF415817

Salmonella enterica 35

4

0

9.00

9.00

100 %

231

AF415845

Salmonella enterica 34-1

4

0

9.00

9.00

100 %

232

AF415724

Salmonella enterica 34

4

0

9.00

9.00

100 %

233

AF415844

Salmonella enterica 33-1

4

0

9.00

9.00

100 %

234

AF415723

Salmonella enterica 33

4

0

9.00

9.00

100 %

235

AF415843

Salmonella enterica 32-1

4

0

9.00

9.00

100 %

236

AF415842

Salmonella enterica 31-1

4

0

9.00

9.00

100 %

237

AF415882

Salmonella enterica 31

4

0

9.00

9.00

100 %

238

AF415722

Salmonella enterica 30-1

4

0

9.00

9.00

100 %

239

AF415797

Salmonella enterica 30

4

0

9.00

9.00

100 %

240

AF415818

Salmonella enterica 3-1

4

0

9.00

9.00

100 %

241

AF415911

Salmonella enterica 3

4

0

9.00

9.00

100 %

242

AF415721

Salmonella enterica 29-1

4

0

9.00

9.00

100 %

243

AF415796

Salmonella enterica 29

4

0

9.00

9.00

100 %

244

AF415720

Salmonella enterica 28-1

4

0

9.00

9.00

100 %

245

AF415864

Salmonella enterica 28

4

0

9.00

9.00

100 %

246

AF415719

Salmonella enterica 27-1

4

0

9.00

9.00

100 %

247

AF415839

Salmonella enterica 27

4

0

9.00

9.00

100 %

248

AF415717

Salmonella enterica 25-1

4

0

9.00

9.00

100 %

249

AF415830

Salmonella enterica 25

4

0

9.00

9.00

100 %

250

AF415715

Salmonella enterica 24-1

4

0

9.00

9.00

100 %

(top of page)

 

No.

Accession

Organism

Out of range

No match

Score sum

Max. score

% Similarity

251

AF415716

Salmonella enterica 24

4

0

9.00

9.00

100 %

252

AF415714

Salmonella enterica 23-1

4

0

9.00

9.00

100 %

253

AF415713

Salmonella enterica 22-1

4

0

9.00

9.00

100 %

254

AF415838

Salmonella enterica 22

4

0

9.00

9.00

100 %

255

AF415712

Salmonella enterica 21-1

4

0

9.00

9.00

100 %

256

AF415880

Salmonella enterica 20-1

4

0

9.00

9.00

100 %

257

AF415829

Salmonella enterica 20

4

0

9.00

9.00

100 %

258

AF415816

Salmonella enterica 2-1

4

0

9.00

9.00

100 %

259

AF415881

Salmonella enterica 2

4

0

9.00

9.00

100 %

260

AF415879

Salmonella enterica 19-1

4

0

9.00

9.00

100 %

261

AF415795

Salmonella enterica 19

4

0

9.00

9.00

100 %

262

AF415794

Salmonella enterica 186

4

0

9.00

9.00

100 %

263

AF415793

Salmonella enterica 185

4

0

9.00

9.00

100 %

264

AF415792

Salmonella enterica 184

4

0

9.00

9.00

100 %

265

AF415791

Salmonella enterica 183

4

0

9.00

9.00

100 %

266

AF415790

Salmonella enterica 182

4

0

9.00

9.00

100 %

267

AF415789

Salmonella enterica 180

4

0

9.00

9.00

100 %

268

AF415878

Salmonella enterica 18-1

4

0

9.00

9.00

100 %

269

AF415863

Salmonella enterica 18

4

0

9.00

9.00

100 %

270

AF415788

Salmonella enterica 179

4

0

9.00

9.00

100 %

271

AF415787

Salmonella enterica 178

4

0

9.00

9.00

100 %

272

AF415786

Salmonella enterica 177

4

0

9.00

9.00

100 %

273

AF415785

Salmonella enterica 176

4

0

9.00

9.00

100 %

274

AF415784

Salmonella enterica 175

4

0

9.00

9.00

100 %

275

AF415783

Salmonella enterica 173

4

0

9.00

9.00

100 %

276

AF415782

Salmonella enterica 172

4

0

9.00

9.00

100 %

277

AF415781

Salmonella enterica 170

4

0

9.00

9.00

100 %

278

AF415877

Salmonella enterica 17-1

4

0

9.00

9.00

100 %

279

AF415837

Salmonella enterica 17

4

0

9.00

9.00

100 %

280

AF415780

Salmonella enterica 169

4

0

9.00

9.00

100 %

281

AF415779

Salmonella enterica 168

4

0

9.00

9.00

100 %

282

AF415778

Salmonella enterica 167

4

0

9.00

9.00

100 %

283

AF415777

Salmonella enterica 166

4

0

9.00

9.00

100 %

284

AF415776

Salmonella enterica 165

4

0

9.00

9.00

100 %

285

AF415775

Salmonella enterica 164

4

0

9.00

9.00

100 %

286

AF415774

Salmonella enterica 163

4

0

9.00

9.00

100 %

287

AF415773

Salmonella enterica 162

4

0

9.00

9.00

100 %

288

AF415772

Salmonella enterica 161

4

0

9.00

9.00

100 %

289

AF415771

Salmonella enterica 160

4

0

9.00

9.00

100 %

290

AF415876

Salmonella enterica 16-1

4

0

9.00

9.00

100 %

291

AF415770

Salmonella enterica 159

4

0

9.00

9.00

100 %

292

AF415769

Salmonella enterica 158

4

0

9.00

9.00

100 %

293

AF415768

Salmonella enterica 157

4

0

9.00

9.00

100 %

294

AF415767

Salmonella enterica 156

4

0

9.00

9.00

100 %

295

AF415766

Salmonella enterica 155

4

0

9.00

9.00

100 %

296

AF415765

Salmonella enterica 154

4

0

9.00

9.00

100 %

297

AF415764

Salmonella enterica 153

4

0

9.00

9.00

100 %

298

AF415763

Salmonella enterica 152

4

0

9.00

9.00

100 %

299

AF415762

Salmonella enterica 151

4

0

9.00

9.00

100 %

300

AF415761

Salmonella enterica 150

4

0

9.00

9.00

100 %

(top of page)

 

No.

Accession

Organism

Out of range

No match

Score sum

Max. score

% Similarity

301

AF415874

Salmonella enterica 15-1

4

0

9.00

9.00

100 %

302

AF415875

Salmonella enterica 15

4

0

9.00

9.00

100 %

303

AF415760

Salmonella enterica 149

4

0

9.00

9.00

100 %

304

AF415759

Salmonella enterica 148

4

0

9.00

9.00

100 %

305

AF415758

Salmonella enterica 147

4

0

9.00

9.00

100 %

306

AF415757

Salmonella enterica 146

4

0

9.00

9.00

100 %

307

AF415756

Salmonella enterica 145

4

0

9.00

9.00

100 %

308

AF415755

Salmonella enterica 144

4

0

9.00

9.00

100 %

309

AF415754

Salmonella enterica 143

4

0

9.00

9.00

100 %

310

AF415753

Salmonella enterica 142

4

0

9.00

9.00

100 %

311

AF415752

Salmonella enterica 141

4

0

9.00

9.00

100 %

312

AF415751

Salmonella enterica 140

4

0

9.00

9.00

100 %

313

AF415873

Salmonella enterica 14-1

4

0

9.00

9.00

100 %

314

AF415750

Salmonella enterica 139

4

0

9.00

9.00

100 %

315

AF415749

Salmonella enterica 138

4

0

9.00

9.00

100 %

316

AF415748

Salmonella enterica 136

4

0

9.00

9.00

100 %

317

AF415747

Salmonella enterica 135

4

0

9.00

9.00

100 %

318

AF415746

Salmonella enterica 133

4

0

9.00

9.00

100 %

319

AF415745

Salmonella enterica 132

4

0

9.00

9.00

100 %

320

AF415744

Salmonella enterica 131

4

0

9.00

9.00

100 %

321

AF415743

Salmonella enterica 130

4

0

9.00

9.00

100 %

322

AF415872

Salmonella enterica 13-1

4

0

9.00

9.00

100 %

323

AF415704

Salmonella enterica 129

4

0

9.00

9.00

100 %

324

AF415840

Salmonella enterica 128

4

0

9.00

9.00

100 %

325

AF415742

Salmonella enterica 127

4

0

9.00

9.00

100 %

326

AF415741

Salmonella enterica 126

4

0

9.00

9.00

100 %

327

AF415740

Salmonella enterica 125

4

0

9.00

9.00

100 %

328

AF415739

Salmonella enterica 124

4

0

9.00

9.00

100 %

329

AF415703

Salmonella enterica 123

4

0

9.00

9.00

100 %

330

AF415738

Salmonella enterica 122

4

0

9.00

9.00

100 %

331

AF415702

Salmonella enterica 121

4

0

9.00

9.00

100 %

332

AF415737

Salmonella enterica 120

4

0

9.00

9.00

100 %

333

AF415736

Salmonella enterica 119

4

0

9.00

9.00

100 %

334

AF415735

Salmonella enterica 118

4

0

9.00

9.00

100 %

335

AF415701

Salmonella enterica 117

4

0

9.00

9.00

100 %

336

AF415859

Salmonella enterica 116

4

0

9.00

9.00

100 %

337

AF415858

Salmonella enterica 115

4

0

9.00

9.00

100 %

338

AF415857

Salmonella enterica 114

4

0

9.00

9.00

100 %

339

AF415813

Salmonella enterica 113

4

0

9.00

9.00

100 %

340

AF415856

Salmonella enterica 112

4

0

9.00

9.00

100 %

341

AF415855

Salmonella enterica 111

4

0

9.00

9.00

100 %

342

AF415910

Salmonella enterica 110

4

0

9.00

9.00

100 %

343

AF415833

Salmonella enterica 11

4

0

9.00

9.00

100 %

344

AF415909

Salmonella enterica 109

4

0

9.00

9.00

100 %

345

AF415869

Salmonella enterica 108

4

0

9.00

9.00

100 %

346

AF415868

Salmonella enterica 107

4

0

9.00

9.00

100 %

347

AF415711

Salmonella enterica 106

4

0

9.00

9.00

100 %

348

AF415734

Salmonella enterica 104

4

0

9.00

9.00

100 %

349

AF415733

Salmonella enterica 102

4

0

9.00

9.00

100 %

350

AF415908

Salmonella enterica 101

4

0

9.00

9.00

100 %

(top of page)

 

No.

Accession

Organism

Out of range

No match

Score sum

Max. score

% Similarity

351

AF415812

Salmonella enterica 10-1

4

0

9.00

9.00

100 %

352

AF415815

Salmonella enterica 1-1

4

0

9.00

9.00

100 %

353

AF260282

Rhizobium tropici PRSFG 9

4

0

9.00

9.00

100 %

354

AF260296

Rhizobium tropici PRSFG 29

4

0

9.00

9.00

100 %

355

AY117614

Rhizobium sp. ISP3 ISP3

4

0

9.00

9.00

100 %

356

AJ506795

Klebsiella sp. K2-1 K2-1

4

0

9.00

9.00

100 %

357

AY102881

uncultured bacterium

3

1

9.00

10.00

90 %

358

AY043385

Serratia marcescens AU664

3

1

9.00

10.00

90 %

359

AF452128

Ochrobactrum sp. LMG 20564 LMG 20564

3

1

9.00

10.00

90 %

360

AF501340

Ochrobactrum anthropi HAMBI2402

3

1

9.00

10.00

90 %

361

X80734

Escherichia vulneris ATCC 33821T

3

1

9.00

10.00

90 %

362

AF530475

Escherichia fergusonii ATCC 35469

3

1

9.00

10.00

90 %

363

AY043392

Escherichia coli AU1713

3

1

9.00

10.00

90 %

364

X80725

Escherichia coli ATCC 11775T

3

1

9.00

10.00

90 %

365

AJ567607

Escherichia coli

3

1

9.00

10.00

90 %

366

AB075693

Escherichia coli

3

1

9.00

10.00

90 %

367

AF373199

Erwinia chrysanthemi 571

3

1

9.00

10.00

90 %

368

AF141892

Erwinia amylovora BC201(=Ea510)

3

1

9.00

10.00

90 %

369

AJ489826

Enterobacteriaceae bacterium CF01Ent-1

3

1

9.00

10.00

90 %

370

AF520711

Dickeya zeae

3

1

9.00

10.00

90 %

371

AB086230

Cedecea neteri GTC1717

3

1

9.00

10.00

90 %

372

AF529354

uncultured gamma proteobacterium

2

2

9.00

11.00

82 %

373

AF529347

uncultured gamma proteobacterium

2

2

9.00

11.00

82 %

374

AF422669

uncultured bacterium

2

2

9.00

11.00

82 %

375

AF422665

uncultured bacterium

2

2

9.00

11.00

82 %

376

AF422650

uncultured bacterium

2

2

9.00

11.00

82 %

377

AF422639

uncultured bacterium

2

2

9.00

11.00

82 %

378

AY135895

uncultured bacterium

2

2

9.00

11.00

82 %

379

AY048885

uncultured bacterium

2

2

9.00

11.00

82 %

380

AF058375

uncultured Escherichia clone MT9

2

2

9.00

11.00

82 %

381

AJ295456

rape rhizosphere bacterium tsb085 Bacteria

2

2

9.00

11.00

82 %

382

AY043386

Serratia marcescens AU736

2

2

9.00

11.00

82 %

383

AY043389

Serratia marcescens AU1388

2

2

9.00

11.00

82 %

384

AY043388

Serratia marcescens AU1285

2

2

9.00

11.00

82 %

385

AY043387

Serratia marcescens AU1209

2

2

9.00

11.00

82 %

386

AF533354

Roseomonas fauriae ATCC 49958

2

2

9.00

11.00

82 %

387

AB045731

Escherichia coli MPEC Y-69

2

2

9.00

11.00

82 %

388

AB045730

Escherichia coli MPEC EX-33

2

2

9.00

11.00

82 %

389

AY319394

Escherichia coli 5.4

2

2

9.00

11.00

82 %

390

AY131237

Erwinia papayae CFBP 11606

2

2

9.00

11.00

82 %

391

AF513469

Enterobacteriaceae bacterium PH31 PH31

2

2

9.00

11.00

82 %

392

AF025373

Citrobacter werkmanii CDC 0876-58

2

2

9.00

11.00

82 %

393

AF025364

Citrobacter sedlakii CDC 4696-86

2

2

9.00

11.00

82 %

394

AB074628

uncultured alpha proteobacterium

1

3

9.00

12.00

75 %

395

AF373198

Pantoea stewartii subsp. stewartii GSPB 2626

1

3

9.00

12.00

75 %

396

AF482682

Agrobacterium sp. PB PB

1

3

9.00

12.00

75 %

397

AY117668

Rhizobium sp. PRF84 PRF84

2

1

9.00

11.00

82 %

398

AF481815

uncultured bacterium

3

0

8.50

10.00

85 %

399

AF233451

Escherichia coli

3

0

8.50

10.00

85 %

400

A14565

Escherichia coli

3

0

8.50

10.00

85 %

(top of page)

 

No.

Accession

Organism

Out of range

No match

Score sum

Max. score

% Similarity

401

AF513468

Enterobacteriaceae bacterium PH29 PH29

2

1

8.50

11.00

77 %

402

AJ508303

Enterobacter cowanii type strain: CIP 107300

2

1

8.50

11.00

77 %

403

M25051

Escherichia coli

3

1

8.00

10.00

80 %

404

AY064412

Rhizobium sp. OmegaB OmegaB

2

2

8.00

11.00

73 %

405

AF441935

uncultured gamma proteobacterium

5

0

8.00

8.00

100 %

406

AF498720

bacterium Ellin338

5

0

8.00

8.00

100 %

407

AF415894

Salmonella enterica 61

5

0

8.00

8.00

100 %

408

AJ310685

uncultured proteobacterium

4

1

8.00

9.00

89 %

409

AJ310684

uncultured proteobacterium

4

1

8.00

9.00

89 %

410

AJ310683

uncultured proteobacterium

4

1

8.00

9.00

89 %

411

AJ310682

uncultured proteobacterium

4

1

8.00

9.00

89 %

412

AJ310681

uncultured proteobacterium

4

1

8.00

9.00

89 %

413

AJ310680

uncultured proteobacterium

4

1

8.00

9.00

89 %

414

AY135890

uncultured bacterium

4

1

8.00

9.00

89 %

415

AF511524

Serratia sp. BuxOS3

4

1

8.00

9.00

89 %

416

AF286867

Serratia quinovorans LMG 7887

4

1

8.00

9.00

89 %

417

AJ279051

Serratia quinovorans CP6g

4

1

8.00

9.00

89 %

418

AJ279049

Serratia quinovorans CP6e

4

1

8.00

9.00

89 %

419

AJ279046

Serratia quinovorans CP6b

4

1

8.00

9.00

89 %

420

AY040208

Serratia proteamaculans

4

1

8.00

9.00

89 %

421

AF286871

Serratia plymuthica DSM 49

4

1

8.00

9.00

89 %

422

AF286870

Serratia odorifera DSM 4582

4

1

8.00

9.00

89 %

423

AF286868

Serratia grimesii LMG 7883

4

1

8.00

9.00

89 %

424

AF373195

Pectobacterium carotovorum subsp. wasabiae 93

4

1

8.00

9.00

89 %

425

AF373194

Pectobacterium carotovorum subsp. wasabiae 92

4

1

8.00

9.00

89 %

426

AF373193

Pectobacterium carotovorum subsp. wasabiae 91

4

1

8.00

9.00

89 %

427

AF373192

Pectobacterium carotovorum subsp. odoriferum 1880

4

1

8.00

9.00

89 %

428

AF373191

Pectobacterium carotovorum subsp. odoriferum 1878

4

1

8.00

9.00

89 %

429

AF373190

Pectobacterium carotovorum subsp. odoriferum 1645-1

4

1

8.00

9.00

89 %

430

AF373186

Pectobacterium carotovorum subsp. carotovorum GSPB 2806

4

1

8.00

9.00

89 %

431

AF373184

Pectobacterium carotovorum subsp. betavasculorum 29

4

1

8.00

9.00

89 %

432

AF373176

Pectobacterium carotovorum subsp. atrosepticum GSPB 1710

4

1

8.00

9.00

89 %

433

AF373182

Pectobacterium carotovorum subsp. atrosepticum 9205

4

1

8.00

9.00

89 %

434

AF373181

Pectobacterium carotovorum subsp. atrosepticum 9204

4

1

8.00

9.00

89 %

435

AF373180

Pectobacterium carotovorum subsp. atrosepticum 9201

4

1

8.00

9.00

89 %

436

AF373178

Pectobacterium carotovorum subsp. atrosepticum 31

4

1

8.00

9.00

89 %

437

AF373177

Pectobacterium carotovorum subsp. atrosepticum 196

4

1

8.00

9.00

89 %

438

AJ506794

Pantoea agglomerans MY1

4

1

8.00

9.00

89 %

439

AJ489355

Enterobacter sp. Lgg10.16 Lgg10.16

4

1

8.00

9.00

89 %

440

AJ487023

uncultured bacterium

3

2

8.00

10.00

80 %

441

AF441726

alpha proteobacterium Kaza-27 Kaza-27

3

2

8.00

10.00

80 %

442

AF522294

Xenorhabdus nematophila CB6

3

2

8.00

10.00

80 %

443

AF373189

Pectobacterium carotovorum subsp. carotovorum E161

3

2

8.00

10.00

80 %

444

AF373188

Pectobacterium carotovorum subsp. carotovorum E155

3

2

8.00

10.00

80 %

445

AF373187

Pectobacterium carotovorum subsp. carotovorum 441

3

2

8.00

10.00

80 %

446

AF373185

Pectobacterium carotovorum subsp. carotovorum 21

3

2

8.00

10.00

80 %

447

AF373183

Pectobacterium carotovorum subsp. atrosepticum E1

3

2

8.00

10.00

80 %

448

AJ489345

Erwinia sp. Lgg10.4 Lgg10.4

3

2

8.00

10.00

80 %

449

AF373174

Erwinia chrysanthemi GSPB 413

3

2

8.00

10.00

80 %

450

AF373201

Erwinia chrysanthemi 573

3

2

8.00

10.00

80 %

(top of page)

 

No.

Accession

Organism

Out of range

No match

Score sum

Max. score

% Similarity

451

AF520709

Erwinia chrysanthemi

3

2

8.00

10.00

80 %

452

AF520712

Dickeya dieffenbachiae

3

2

8.00

10.00

80 %

453

AF234721

uncultured sludge bacterium A7

2

3

8.00

11.00

73 %

454

AJ310690

uncultured proteobacterium

2

3

8.00

11.00

73 %

455

AJ310689

uncultured proteobacterium

2

3

8.00

11.00

73 %

456

AJ310687

uncultured proteobacterium

2

3

8.00

11.00

73 %

457

AJ310686

uncultured proteobacterium

2

3

8.00

11.00

73 %

458

AF529356

uncultured gamma proteobacterium

2

3

8.00

11.00

73 %

459

AF529337

uncultured gamma proteobacterium

2

3

8.00

11.00

73 %

460

AF529100

uncultured gamma proteobacterium

2

3

8.00

11.00

73 %

461

AF422681

uncultured bacterium

2

3

8.00

11.00

73 %

462

AY135901

uncultured bacterium

2

3

8.00

11.00

73 %

463

AY038487

uncultured bacterium

2

3

8.00

11.00

73 %

464

AY043640

uncultured alpha proteobacterium

2

3

8.00

11.00

73 %

465

AY043618

uncultured alpha proteobacterium

2

3

8.00

11.00

73 %

466

AJ532705

uncultured alpha proteobacterium

2

3

8.00

11.00

73 %

467

AF530149

Shewanella gelidimarina MGP-71

2

3

8.00

11.00

73 %

468

AF025852

Rhizobium huautlense SO2 (type strain)

2

3

8.00

11.00

73 %

469

AY077753

Obesumbacterium proteus

2

3

8.00

11.00

73 %

470

AY217654

Escherichia senegalensis F1p

2

3

8.00

11.00

73 %

471

AF501346

Devosia riboflavina HAMBI2401

2

3

8.00

11.00

73 %

472

AF406666

Agrobacterium tumefaciens A17

2

3

8.00

11.00

73 %

473

AJ514439

uncultured bacterium

3

0

8.00

10.00

80 %

474

AY133103

uncultured alpha proteobacterium

2

1

8.00

11.00

73 %

475

AY024335

Sinorhizobium morelense Lc04

2

1

8.00

11.00

73 %

476

X80733

Escherichia

3

1

7.75

10.00

78 %

477

AJ277980

Escherichia fergusonii WG 167

3

2

7.25

10.00

73 %

478

AY325749

uncultured Escherichia sp

4

0

7.00

9.00

78 %

479

AY038420

uncultured gamma proteobacterium

6

0

7.00

7.00

100 %

480

AJ489370

Pectobacterium sp. Lgg15.14 Lgg15.14

5

1

7.00

8.00

88 %

481

AJ489369

Pectobacterium sp. Lgg15.13 Lgg15.13

5

1

7.00

8.00

88 %

482

AF186438

uncultured sponge symbiont PAUC53

4

2

7.00

9.00

78 %

483

AF365508

uncultured bacterium

4

2

7.00

9.00

78 %

484

AY039439

earthworm cast bacterium C11D1 Bacteria C11D1

4

2

7.00

9.00

78 %

485

U85855

Pseudoalteromonas prydzensis MB8-11

4

2

7.00

9.00

78 %

486

AF373179

Pectobacterium carotovorum subsp. atrosepticum 558

4

2

7.00

9.00

78 %

487

AF365713

uncultured bacterium

3

3

7.00

10.00

70 %

488

AF431126

uncultured alpha proteobacterium

3

3

7.00

10.00

70 %

489

AB042502

halophilic bacterium TAG C7 TAG C7

3

3

7.00

10.00

70 %

490

AJ279050

Serratia quinovorans CP6f

3

3

7.00

10.00

70 %

491

AB055788

Pseudoalteromonas sp. Esur-1 Esur-1

3

3

7.00

10.00

70 %

492

AF516882

Mesorhizobium plurifarium subsp. americum Ls38

3

3

7.00

10.00

70 %

493

AF513450

Idiomarina sp. LA26 LA26

3

3

7.00

10.00

70 %

494

AJ440214

Idiomarina baltica OS145

3

3

7.00

10.00

70 %

495

AF508099

Agrobacterium tumefaciens

3

3

7.00

10.00

70 %

496

AF508098

Agrobacterium tumefaciens

3

3

7.00

10.00

70 %

497

AF508097

Agrobacterium tumefaciens

3

3

7.00

10.00

70 %

498

AF508096

Agrobacterium tumefaciens

3

3

7.00

10.00

70 %

499

AF522927

uncultured bacterium

4

0

6.50

9.00

72 %

500

AJ279053

Serratia quinovorans PC1

4

1

6.50

9.00

72 %

(top of page)

 

No.

Accession

Organism

Out of range

No match

Score sum

Max. score

% Similarity

501

AY100686

marine bacterium Gu4 Gu4

4

2

6.50

9.00

72 %

502

AF000620

Sinorhizobium meliloti WSM419

7

0

6.00

6.00

100 %

503

AF000619

Rhizobium tropici YL81

7

0

6.00

6.00

100 %

504

AF000618

Rhizobium tropici WA32

7

0

6.00

6.00

100 %

505

AF466174

Rhizobium tropici UPM1152

7

0

6.00

6.00

100 %

506

AF000616

Rhizobium tropici BDT122

7

0

6.00

6.00

100 %

507

AF469905

Rhizobium sp. SSR336 SSR336

7

0

6.00

6.00

100 %

508

AF469899

Rhizobium sp. SSR312 SSR312

7

0

6.00

6.00

100 %

509

AF469898

Rhizobium sp. SSR302 SSR302

7

0

6.00

6.00

100 %

510

AF469897

Rhizobium sp. SSR301 SSR301

7

0

6.00

6.00

100 %

511

AF469902

Rhizobium sp. SAR617 SAR617

7

0

6.00

6.00

100 %

512

AF469901

Rhizobium sp. SAR611 SAR611

7

0

6.00

6.00

100 %

513

AF469900

Rhizobium sp. SAR610 SAR610

7

0

6.00

6.00

100 %

514

AY072787

Rhizobium leguminosarum bv. viciae UPM791

7

0

6.00

6.00

100 %

515

AF000612

Rhizobium leguminosarum bv. phaseoli COO23

7

0

6.00

6.00

100 %

516

AY117578

Kluyvera sp. DV48 DV48

7

0

6.00

6.00

100 %

517

Z47359

Escherichia coli 2348/69 EPEC, 127:H6

7

0

6.00

6.00

100 %

518

AJ404541

Escherichia coli

7

0

6.00

6.00

100 %

519

AJ404540

Escherichia coli

7

0

6.00

6.00

100 %

520

AF431337

uncultured gamma proteobacterium

6

1

6.00

7.00

86 %

521

AF000615

Rhizobium leguminosarum bv. phaseoli YLB81

6

1

6.00

7.00

86 %

522

AF000613

Rhizobium leguminosarum bv. phaseoli PORA44

6

1

6.00

7.00

86 %

523

AF325147

Pseudoalteromonas sp. D23 D23

6

1

6.00

7.00

86 %

524

AJ404543

Escherichia coli

6

1

6.00

7.00

86 %

525

AF373175

Erwinia chrysanthemi 582

5

2

6.00

8.00

75 %

526

AF373202

Erwinia chrysanthemi 580

5

2

6.00

8.00

75 %

527

AF520708

Dickeya dianthicola CFBP 1200

5

2

6.00

8.00

75 %

528

AF520707

Dickeya dadantii

5

2

6.00

8.00

75 %

529

AB070833

Rhizobium sp. PDA-2 PDA-2

7

0

5.00

6.00

83 %

530

AF000617

Rhizobium tropici LCL51

8

0

5.00

5.00

100 %

531

AF000611

Rhizobium leguminosarum bv. phaseoli COO14

8

0

5.00

5.00

100 %

532

AF000610

Rhizobium leguminosarum bv. phaseoli BDLN116

8

0

5.00

5.00

100 %

533

AY301082

Escherichia coli TA79

8

0

5.00

5.00

100 %

534

AY301081

Escherichia coli TA57

8

0

5.00

5.00

100 %

535

AY301080

Escherichia coli TA479

8

0

5.00

5.00

100 %

536

AY301079

Escherichia coli TA234

8

0

5.00

5.00

100 %

537

AY301083

Escherichia coli TA184

8

0

5.00

5.00

100 %

538

AY301078

Escherichia coli TA157

8

0

5.00

5.00

100 %

539

AJ404542

Escherichia coli

8

0

5.00

5.00

100 %

540

AF432320

uncultured gamma proteobacterium

7

1

5.00

6.00

83 %

541

AF000614

Rhizobium leguminosarum bv. phaseoli PORB21

7

1

5.00

6.00

83 %

(top of page)

 

Back to Figure 5