TReFID
~ Control C ~
Analysis ResultsThe table below summarizes the results of a TReFID analysis based on the SSU tRFs calculated for an artificial bacterial community of Azospirillum brasilense, Escherichia coli, and Rhizobium leguminosarum. This in silico analysis provided 537 sequences from the SSU database (version A). The relatedness of these sequences is shown in the phylogram of Figure 5; details on the analysis parameters are given on the same page.
The column titled "Out of range" in the table below gives the number of restriction enzymes (out of thirteen employed) that have no restriction site in the 500 nt downstream of the 63f primer binding site. Therefore, the actual number of enzymes contributing to the identification process is 13 less the number in this column.
The "No match" column similarly gives the number of enzymes . Basically, the lower the numbers in both columns are the more probable reliable...
The maximum score for a given sequence is equal to the number of restriction enzymes providing a tRF, because the highest possible score for any match is 1.00. The similarity value is the ratio of actual score sum and the maximum score.
The results are sorted by the accuracy of the ...
However, the 541 sequences represent only 168 different tRF profiles or "polygons". Actually, the results list contained 208 sequences from Salomonella enterica with the same tRF profiles. But even without S. enterica, each tRF profile in the results list comprised about two sequences on average. The reasoning behind this is: First, the relative high redundancy in the database results in multiple hits for the same species (e.g. 56 sequences of E. coli). Second, closely related species cannot be differentiated on grounds of their tRF profiles (e. g. E. coli [link to trf pattern] and E. albertii [link to trf pattern]). However, the accuracy of the TReFID approach is limited by the same tRF profiles occuring in species of different genera (e. g. Dickeya dadantii [link to trf pattern] and Erwinia chrysanthemi [link to trf pattern]) and by the same species being represented by different tRF patterns. For example, the 56 E. coli sequences contained in the rersults list yield 18 different tRF patterns. On the other hand, the actual differences between these patterns are small in most cases (e.g. one nt difference in tRF length or one missing/additional restriction site for a single enzyme).
A graphical representation of the sequences in the results list is given in Figure 5.
details on the scoring provided for selected entries (see links in the table below)
Primary / secondary tRFs
> Patterns
> Phylogeny
Download TReFID results file for Control C (TAB delimited text, e. g. for import in Microsoft Excel)
Download FASTA file of all these sequences (plain text, e. g. for ClustalX)
| Project Title: | In_Silico |
| Date: | Tuesday, 11.Nov.03 (10:53) |
| Sample: | Database_Excerpt |
| Primers: | 63f-JOE |
| Enzymes: | 13 (AluI, Bme1390I, Bsh1236I, Cfr13I, HaeIII, Hin6I, HinfI, MboI, MspI, RsaI, TaiI, TaqI, TasI) |
| Notes: | mixture of three strains (Abr Sp7 + Eco O157:H7 + Rle WSM1698) |
| Database: | SSU_21669entries.TReFID.org |
| (CRX-SERVER\\C:\TReFID v1.1\TReFID v1.1\source\) | |
| Database version: | 09-16-2004, 00:00:00 |
| Analysis date: | 11-13-2004, 01:36:53 |
| Interval: | ± 0.50 % |
| RE fraction: | 0.69 |
| (9 of 13 enzymes are required to give a score) | |
| Results: | 541 |
| Avg. score sum: | 8.93 |
|
Accession |
Organism |
Out of range |
No match |
Score sum |
Max. score |
% Similarity |
|
|
1 |
AF525840 |
uncultured soil bacterium |
1 |
0 |
12.00 |
12.00 |
100 % |
|
2 |
1 |
0 |
12.00 |
12.00 |
100 % |
||
|
3 |
AF260274 |
Rhizobium tropici SEMIA 4080 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
4 |
AY117671 |
Rhizobium tropici R05 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
5 |
AY117670 |
Rhizobium tropici R01 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
6 |
AF260280 |
Rhizobium tropici PRSFG 7 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
7 |
AF260279 |
Rhizobium tropici PRSFG 5 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
8 |
AF260294 |
Rhizobium tropici PRSFG 27 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
9 |
AF260293 |
Rhizobium tropici PRSFG 26 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
10 |
AF260292 |
Rhizobium tropici PRSFG 25 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
11 |
AF260290 |
Rhizobium tropici PRSFG 23 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
12 |
AF260277 |
Rhizobium tropici PRSFG 2 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
13 |
AY117624 |
Rhizobium tropici PRF93 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
14 |
AF260275 |
Rhizobium tropici PRF54 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
15 |
AF260298 |
Rhizobium tropici PRF35 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
16 |
AY117623 |
Rhizobium tropici PRF34 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
17 |
AY117622 |
Rhizobium tropici PRF233 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
18 |
AY117618 |
Rhizobium tropici ISP59 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
19 |
AF480572 |
Rhizobium tropici |
1 |
0 |
12.00 |
12.00 |
100 % |
|
20 |
AF286362 |
Rhizobium sp. PRY71 PRY71 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
21 |
AY210708 |
Rhizobium sp. Db4-14 Db4-14 |
1 |
0 |
12.00 |
12.00 |
100 % |
|
22 |
1 |
0 |
12.00 |
12.00 |
100 % |
||
|
23 |
AF260278 |
Rhizobium tropici PRSFG 3 |
1 |
0 |
11.50 |
12.00 |
96 % |
|
24 |
AF260276 |
Rhizobium tropici PRSFG 1 |
1 |
0 |
11.50 |
12.00 |
96 % |
|
25 |
AF286363 |
Rhizobium sp. PRY73 PRY73 |
1 |
0 |
11.50 |
12.00 |
96 % |
|
26 |
AF441730 |
alpha proteobacterium Kaza-35 Kaza-35 |
1 |
0 |
11.00 |
12.00 |
92 % |
|
27 |
AY166841 |
Rhizobium tropici UPRM8033 |
1 |
0 |
11.00 |
12.00 |
92 % |
|
28 |
AF423251 |
uncultured soil bacterium |
2 |
0 |
11.00 |
11.00 |
100 % |
|
29 |
AF525841 |
uncultured soil bacterium |
2 |
0 |
11.00 |
11.00 |
100 % |
|
30 |
AF525838 |
uncultured soil bacterium |
2 |
0 |
11.00 |
11.00 |
100 % |
|
31 |
AF525837 |
uncultured soil bacterium |
2 |
0 |
11.00 |
11.00 |
100 % |
|
32 |
AF445090 |
uncultured bacterium |
2 |
0 |
11.00 |
11.00 |
100 % |
|
33 |
AF407723 |
uncultured bacterium |
2 |
0 |
11.00 |
11.00 |
100 % |
|
34 |
AF467359 |
uncultured alpha proteobacterium |
2 |
0 |
11.00 |
11.00 |
100 % |
|
35 |
AY162066 |
alpha proteobacterium PII_GH3.2.E12 PII_GH3.2.E12 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
36 |
AY162064 |
alpha proteobacterium PII_GH2.2.D12 PII_GH2.2.D12 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
37 |
AY162059 |
alpha proteobacterium PII_GH1.2.A6 PII_GH1.2.A6 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
38 |
AF250353 |
Sinorhizobium xinjiangense Rx22 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
39 |
AF250355 |
Sinorhizobium xinjiangense CCBAU830804 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
40 |
AF250354 |
Sinorhizobium xinjiangense CCBAU110 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
41 |
AF250377 |
Sinorhizobium xinjiangense CCBAU 830844 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
42 |
AF357225 |
Sinorhizobium sp. 9702-M4 9702-M4 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
43 |
AF533685 |
Sinorhizobium meliloti WSM1702 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
44 |
AF533684 |
Sinorhizobium meliloti WSM1701 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
45 |
AF260284 |
Rhizobium tropici PRSFG 14 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
46 |
AY117612 |
Rhizobium tropici ISP25 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
47 |
AY148434 |
Rhizobium sp. JH1 JH1 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
48 |
AY148433 |
Rhizobium sp. AB3 AB3 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
49 |
AJ440750 |
Gram-negative bacterium DM 2 Bacteria |
2 |
0 |
11.00 |
11.00 |
100 % |
|
50 |
AJ440749 |
Gram-negative bacterium DM 1 Bacteria |
2 |
0 |
11.00 |
11.00 |
100 % |
|
No. |
Accession |
Organism |
Out of range |
No match |
Score sum |
Max. score |
% Similarity |
|
51 |
AY040360 |
Ensifer adhaerens LMG 20582 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
52 |
AJ420775 |
Ensifer adhaerens LMG 20582 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
53 |
AJ420774 |
Ensifer adhaerens HAMBI 1631 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
54 |
AJ420773 |
Ensifer adhaerens 5D19 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
55 |
AY118223 |
Azospirillum sp. DA6-2-2 DA6-2-2 |
2 |
0 |
11.00 |
11.00 |
100 % |
|
56 |
2 |
0 |
11.00 |
11.00 |
100 % |
||
|
57 |
AY096165 |
uncultured bacterium |
1 |
1 |
11.00 |
12.00 |
92 % |
|
58 |
AB074635 |
uncultured alpha proteobacterium |
1 |
1 |
11.00 |
12.00 |
92 % |
|
59 |
AF441727 |
alpha proteobacterium Kaza-29 Kaza-29 |
1 |
1 |
11.00 |
12.00 |
92 % |
|
60 |
AF406659 |
Agrobacterium tumefaciens A10-B12 |
1 |
1 |
11.00 |
12.00 |
92 % |
|
61 |
U89832 |
Rhizobium tropici CIAT 899 |
1 |
0 |
10.00 |
12.00 |
83 % |
|
62 |
Z29617 |
Azospirillum brasilense |
2 |
0 |
10.00 |
11.00 |
91 % |
|
63 |
AF423294 |
uncultured soil bacterium |
3 |
0 |
10.00 |
10.00 |
100 % |
|
64 |
AF423247 |
uncultured soil bacterium |
3 |
0 |
10.00 |
10.00 |
100 % |
|
65 |
AB064879 |
uncultured gamma proteobacterium |
3 |
0 |
10.00 |
10.00 |
100 % |
|
66 |
AF481814 |
uncultured bacterium |
3 |
0 |
10.00 |
10.00 |
100 % |
|
67 |
AF371936 |
uncultured bacterium |
3 |
0 |
10.00 |
10.00 |
100 % |
|
68 |
AF371931 |
uncultured bacterium |
3 |
0 |
10.00 |
10.00 |
100 % |
|
69 |
AF371849 |
uncultured bacterium |
3 |
0 |
10.00 |
10.00 |
100 % |
|
70 |
AF371848 |
uncultured bacterium |
3 |
0 |
10.00 |
10.00 |
100 % |
|
71 |
AF371847 |
uncultured bacterium |
3 |
0 |
10.00 |
10.00 |
100 % |
|
72 |
AY135915 |
uncultured bacterium |
3 |
0 |
10.00 |
10.00 |
100 % |
|
73 |
AJ487022 |
uncultured bacterium |
3 |
0 |
10.00 |
10.00 |
100 % |
|
74 |
AJ487021 |
uncultured bacterium |
3 |
0 |
10.00 |
10.00 |
100 % |
|
75 |
AJ409001 |
uncultured bacterium |
3 |
0 |
10.00 |
10.00 |
100 % |
|
76 |
AY039431 |
soil bacterium S74D1 Bacteria S74D1 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
77 |
AF260289 |
Rhizobium tropici PRSFG 22 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
78 |
AF260285 |
Rhizobium tropici PRSFG 15 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
79 |
AB088415 |
Ochrobactrum anthropi NH-15 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
80 |
AY082448 |
Escherichia sp. 253b 253b |
3 |
0 |
10.00 |
10.00 |
100 % |
|
81 |
X80731 |
Escherichia coli PK3 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
82 |
X80730 |
Escherichia coli PK3 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
83 |
X80729 |
Escherichia coli PK3 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
84 |
X80728 |
Escherichia coli PK3 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
85 |
X80727 |
Escherichia coli PK3 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
86 |
X80723 |
Escherichia coli PK3 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
87 |
X80722 |
Escherichia coli PK3 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
88 |
X80721 |
Escherichia coli PK3 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
89 |
AB035926 |
Escherichia coli O157:H7 RIMD0509952 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
90 |
AB035925 |
Escherichia coli O157:H7 RIMD0509952 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
91 |
AB035924 |
Escherichia coli O157:H7 RIMD0509952 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
92 |
AB035923 |
Escherichia coli O157:H7 RIMD0509952 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
93 |
AB035922 |
Escherichia coli O157:H7 RIMD0509952 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
94 |
AB035921 |
Escherichia coli O157:H7 RIMD 0509952 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
95 |
AB035920 |
Escherichia coli O157:H7 RIMD 0509952 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
96 |
AY513502 |
Escherichia coli O157:H7 O157:H7 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
97 |
AY186041 |
Escherichia coli MP2 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
98 |
X80732 |
Escherichia coli MC4100 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
99 |
AJ516045 |
Escherichia coli LE/28 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
100 |
AY186040 |
Escherichia coli EBI5 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
No. |
Accession |
Organism |
Out of range |
No match |
Score sum |
Max. score |
% Similarity |
|
101 |
AB075685 |
Escherichia coli C28 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
102 |
AF403733 |
Escherichia coli C2 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
103 |
X80724 |
Escherichia coli ATCC 25922 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
104 |
AY319393 |
Escherichia coli 5.2 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
105 |
AF076037 |
Escherichia coli |
3 |
0 |
10.00 |
10.00 |
100 % |
|
106 |
Z83205 |
Escherichia coli |
3 |
0 |
10.00 |
10.00 |
100 % |
|
107 |
Z83204 |
Escherichia coli |
3 |
0 |
10.00 |
10.00 |
100 % |
|
108 |
V00348 |
Escherichia coli |
3 |
0 |
10.00 |
10.00 |
100 % |
|
109 |
J01695 |
Escherichia coli |
3 |
0 |
10.00 |
10.00 |
100 % |
|
110 |
3 |
0 |
10.00 |
10.00 |
100 % |
||
|
111 |
AY078065 |
Escherichia coli |
3 |
0 |
10.00 |
10.00 |
100 % |
|
112 |
AJ567617 |
Escherichia coli |
3 |
0 |
10.00 |
10.00 |
100 % |
|
113 |
AJ567606 |
Escherichia coli |
3 |
0 |
10.00 |
10.00 |
100 % |
|
114 |
AJ567540 |
Escherichia coli |
3 |
0 |
10.00 |
10.00 |
100 % |
|
115 |
AF511430 |
Escherichia coli |
3 |
0 |
10.00 |
10.00 |
100 % |
|
116 |
AJ508775 |
Escherichia albertii type strain: LMG 20976 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
117 |
AF463533 |
Citrobacter sp. TSA-1 TSA-1 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
118 |
AJ514240 |
Citrobacter freundii |
3 |
0 |
10.00 |
10.00 |
100 % |
|
119 |
AF025371 |
Citrobacter farmeri CDC 2991-81 |
3 |
0 |
10.00 |
10.00 |
100 % |
|
120 |
AF423283 |
uncultured soil bacterium |
2 |
1 |
10.00 |
11.00 |
91 % |
|
121 |
AF423262 |
uncultured soil bacterium |
2 |
1 |
10.00 |
11.00 |
91 % |
|
122 |
AF423250 |
uncultured soil bacterium |
2 |
1 |
10.00 |
11.00 |
91 % |
|
123 |
AF423229 |
uncultured soil bacterium |
2 |
1 |
10.00 |
11.00 |
91 % |
|
124 |
AF423223 |
uncultured soil bacterium |
2 |
1 |
10.00 |
11.00 |
91 % |
|
125 |
AF423210 |
uncultured soil bacterium |
2 |
1 |
10.00 |
11.00 |
91 % |
|
126 |
AB074608 |
uncultured gamma proteobacterium |
2 |
1 |
10.00 |
11.00 |
91 % |
|
127 |
AJ487029 |
uncultured bacterium |
2 |
1 |
10.00 |
11.00 |
91 % |
|
128 |
AY133104 |
uncultured alpha proteobacterium |
2 |
1 |
10.00 |
11.00 |
91 % |
|
129 |
AF529121 |
uncultured alpha proteobacterium |
2 |
1 |
10.00 |
11.00 |
91 % |
|
130 |
AJ318921 |
Sinorhizobium sp. MH37 MH37 |
2 |
1 |
10.00 |
11.00 |
91 % |
|
131 |
AF452129 |
Sinorhizobium morelense LMG 20571 |
2 |
1 |
10.00 |
11.00 |
91 % |
|
132 |
AJ420776 |
Sinorhizobium morelense LMG 20571 |
2 |
1 |
10.00 |
11.00 |
91 % |
|
133 |
AF364067 |
Sinorhizobium kummerowiae CCBAU 71714 |
2 |
1 |
10.00 |
11.00 |
91 % |
|
134 |
AY150050 |
Roseomonas genomospecies 6 ATCC 49961 |
2 |
1 |
10.00 |
11.00 |
91 % |
|
135 |
AY150046 |
Roseomonas fauriae ATCC 49958 |
2 |
1 |
10.00 |
11.00 |
91 % |
|
136 |
AF025372 |
Citrobacter koseri CDC 3613-63 |
2 |
1 |
10.00 |
11.00 |
91 % |
|
137 |
AB049110 |
Azospirillum sp. B506 B506 |
2 |
1 |
10.00 |
11.00 |
91 % |
|
138 |
AF508093 |
Agrobacterium tumefaciens |
2 |
1 |
10.00 |
11.00 |
91 % |
|
139 |
AY133084 |
uncultured gamma proteobacterium |
1 |
2 |
10.00 |
12.00 |
83 % |
|
140 |
AJ534667 |
uncultured alpha proteobacterium |
1 |
2 |
10.00 |
12.00 |
83 % |
|
141 |
AF508094 |
Agrobacterium tumefaciens |
1 |
2 |
10.00 |
12.00 |
83 % |
|
142 |
AY144207 |
uncultured alpha proteobacterium |
4 |
0 |
9.00 |
9.00 |
100 % |
|
143 |
AY394631 |
uncultured Escherichia sp |
4 |
0 |
9.00 |
9.00 |
100 % |
|
144 |
AY043584 |
forest soil bacterium 1S2.C7 Bacteria 1S2.C7 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
145 |
4 |
0 |
9.00 |
9.00 |
100 % |
||
|
146 |
AF415832 |
Salmonella enterica 99 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
147 |
AF415732 |
Salmonella enterica 98 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
148 |
AF415710 |
Salmonella enterica 97 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
149 |
AF415866 |
Salmonella enterica 95 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
150 |
AF415709 |
Salmonella enterica 93 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
No. |
Accession |
Organism |
Out of range |
No match |
Score sum |
Max. score |
% Similarity |
|
151 |
AF415906 |
Salmonella enterica 92 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
152 |
AF415905 |
Salmonella enterica 91 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
153 |
AF415904 |
Salmonella enterica 90 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
154 |
AF415827 |
Salmonella enterica 9-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
155 |
AF415828 |
Salmonella enterica 9 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
156 |
AF415903 |
Salmonella enterica 89 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
157 |
AF415902 |
Salmonella enterica 88 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
158 |
AF415901 |
Salmonella enterica 87 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
159 |
AF415900 |
Salmonella enterica 86 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
160 |
AF415899 |
Salmonella enterica 85 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
161 |
AF415898 |
Salmonella enterica 84 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
162 |
AF415811 |
Salmonella enterica 83 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
163 |
AF415810 |
Salmonella enterica 82 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
164 |
AF415916 |
Salmonella enterica 80 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
165 |
AF415826 |
Salmonella enterica 8-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
166 |
AF415917 |
Salmonella enterica 8 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
167 |
AF415915 |
Salmonella enterica 79 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
168 |
AF415809 |
Salmonella enterica 78 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
169 |
AF415808 |
Salmonella enterica 77 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
170 |
AF415854 |
Salmonella enterica 76 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
171 |
AF415706 |
Salmonella enterica 75 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
172 |
AF415807 |
Salmonella enterica 74 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
173 |
AF415806 |
Salmonella enterica 71 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
174 |
AF415860 |
Salmonella enterica 70 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
175 |
AF415825 |
Salmonella enterica 7-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
176 |
AF415897 |
Salmonella enterica 7 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
177 |
AF415836 |
Salmonella enterica 69 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
178 |
AF415708 |
Salmonella enterica 68 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
179 |
AF415824 |
Salmonella enterica 67 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
180 |
AF415835 |
Salmonella enterica 66 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
181 |
AF415913 |
Salmonella enterica 64 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
182 |
AF415805 |
Salmonella enterica 63 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
183 |
AF415895 |
Salmonella enterica 62 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
184 |
AF415731 |
Salmonella enterica 60-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
185 |
AF415804 |
Salmonella enterica 60 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
186 |
AF415896 |
Salmonella enterica 6 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
187 |
AF415729 |
Salmonella enterica 59-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
188 |
AF415893 |
Salmonella enterica 59 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
189 |
AF415728 |
Salmonella enterica 58-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
190 |
AF415803 |
Salmonella enterica 58 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
191 |
AF415727 |
Salmonella enterica 57-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
192 |
AF415822 |
Salmonella enterica 57 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
193 |
AF415726 |
Salmonella enterica 56-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
194 |
AF415802 |
Salmonella enterica 56 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
195 |
AF415892 |
Salmonella enterica 55-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
196 |
AF415801 |
Salmonella enterica 55 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
197 |
AF415891 |
Salmonella enterica 54-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
198 |
AF415890 |
Salmonella enterica 54 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
199 |
AF415889 |
Salmonella enterica 53-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
200 |
AF415912 |
Salmonella enterica 53 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
No. |
Accession |
Organism |
Out of range |
No match |
Score sum |
Max. score |
% Similarity |
|
201 |
AF415888 |
Salmonella enterica 52-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
202 |
AF415887 |
Salmonella enterica 52 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
203 |
AF415886 |
Salmonella enterica 51-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
204 |
AF415885 |
Salmonella enterica 51 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
205 |
AF415821 |
Salmonella enterica 50-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
206 |
AF415800 |
Salmonella enterica 50 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
207 |
AF415823 |
Salmonella enterica 5-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
208 |
AF415730 |
Salmonella enterica 5 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
209 |
AF415819 |
Salmonella enterica 49-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
210 |
AF415799 |
Salmonella enterica 49 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
211 |
AF415798 |
Salmonella enterica 48 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
212 |
AF415884 |
Salmonella enterica 47 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
213 |
AF415907 |
Salmonella enterica 44 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
214 |
AF415831 |
Salmonella enterica 43 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
215 |
AF415853 |
Salmonella enterica 42-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
216 |
AF415862 |
Salmonella enterica 42 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
217 |
AF415852 |
Salmonella enterica 41-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
218 |
AF415867 |
Salmonella enterica 41 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
219 |
AF415851 |
Salmonella enterica 40-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
220 |
AF415861 |
Salmonella enterica 40 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
221 |
AF415820 |
Salmonella enterica 4-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
222 |
AF415725 |
Salmonella enterica 4 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
223 |
AF415850 |
Salmonella enterica 39-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
224 |
AF415834 |
Salmonella enterica 39 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
225 |
AF415849 |
Salmonella enterica 38-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
226 |
AF415848 |
Salmonella enterica 37-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
227 |
AF415847 |
Salmonella enterica 36-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
228 |
AF415705 |
Salmonella enterica 36 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
229 |
AF415846 |
Salmonella enterica 35-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
230 |
AF415817 |
Salmonella enterica 35 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
231 |
AF415845 |
Salmonella enterica 34-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
232 |
AF415724 |
Salmonella enterica 34 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
233 |
AF415844 |
Salmonella enterica 33-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
234 |
AF415723 |
Salmonella enterica 33 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
235 |
AF415843 |
Salmonella enterica 32-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
236 |
AF415842 |
Salmonella enterica 31-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
237 |
AF415882 |
Salmonella enterica 31 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
238 |
AF415722 |
Salmonella enterica 30-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
239 |
AF415797 |
Salmonella enterica 30 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
240 |
AF415818 |
Salmonella enterica 3-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
241 |
AF415911 |
Salmonella enterica 3 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
242 |
AF415721 |
Salmonella enterica 29-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
243 |
AF415796 |
Salmonella enterica 29 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
244 |
AF415720 |
Salmonella enterica 28-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
245 |
AF415864 |
Salmonella enterica 28 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
246 |
AF415719 |
Salmonella enterica 27-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
247 |
AF415839 |
Salmonella enterica 27 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
248 |
AF415717 |
Salmonella enterica 25-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
249 |
AF415830 |
Salmonella enterica 25 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
250 |
AF415715 |
Salmonella enterica 24-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
No. |
Accession |
Organism |
Out of range |
No match |
Score sum |
Max. score |
% Similarity |
|
251 |
AF415716 |
Salmonella enterica 24 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
252 |
AF415714 |
Salmonella enterica 23-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
253 |
AF415713 |
Salmonella enterica 22-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
254 |
AF415838 |
Salmonella enterica 22 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
255 |
AF415712 |
Salmonella enterica 21-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
256 |
AF415880 |
Salmonella enterica 20-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
257 |
AF415829 |
Salmonella enterica 20 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
258 |
AF415816 |
Salmonella enterica 2-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
259 |
AF415881 |
Salmonella enterica 2 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
260 |
AF415879 |
Salmonella enterica 19-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
261 |
AF415795 |
Salmonella enterica 19 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
262 |
AF415794 |
Salmonella enterica 186 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
263 |
AF415793 |
Salmonella enterica 185 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
264 |
AF415792 |
Salmonella enterica 184 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
265 |
AF415791 |
Salmonella enterica 183 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
266 |
AF415790 |
Salmonella enterica 182 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
267 |
AF415789 |
Salmonella enterica 180 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
268 |
AF415878 |
Salmonella enterica 18-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
269 |
AF415863 |
Salmonella enterica 18 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
270 |
AF415788 |
Salmonella enterica 179 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
271 |
AF415787 |
Salmonella enterica 178 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
272 |
AF415786 |
Salmonella enterica 177 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
273 |
AF415785 |
Salmonella enterica 176 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
274 |
AF415784 |
Salmonella enterica 175 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
275 |
AF415783 |
Salmonella enterica 173 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
276 |
AF415782 |
Salmonella enterica 172 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
277 |
AF415781 |
Salmonella enterica 170 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
278 |
AF415877 |
Salmonella enterica 17-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
279 |
AF415837 |
Salmonella enterica 17 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
280 |
AF415780 |
Salmonella enterica 169 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
281 |
AF415779 |
Salmonella enterica 168 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
282 |
AF415778 |
Salmonella enterica 167 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
283 |
AF415777 |
Salmonella enterica 166 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
284 |
AF415776 |
Salmonella enterica 165 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
285 |
AF415775 |
Salmonella enterica 164 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
286 |
AF415774 |
Salmonella enterica 163 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
287 |
AF415773 |
Salmonella enterica 162 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
288 |
AF415772 |
Salmonella enterica 161 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
289 |
AF415771 |
Salmonella enterica 160 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
290 |
AF415876 |
Salmonella enterica 16-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
291 |
AF415770 |
Salmonella enterica 159 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
292 |
AF415769 |
Salmonella enterica 158 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
293 |
AF415768 |
Salmonella enterica 157 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
294 |
AF415767 |
Salmonella enterica 156 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
295 |
AF415766 |
Salmonella enterica 155 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
296 |
AF415765 |
Salmonella enterica 154 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
297 |
AF415764 |
Salmonella enterica 153 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
298 |
AF415763 |
Salmonella enterica 152 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
299 |
AF415762 |
Salmonella enterica 151 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
300 |
AF415761 |
Salmonella enterica 150 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
No. |
Accession |
Organism |
Out of range |
No match |
Score sum |
Max. score |
% Similarity |
|
301 |
AF415874 |
Salmonella enterica 15-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
302 |
AF415875 |
Salmonella enterica 15 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
303 |
AF415760 |
Salmonella enterica 149 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
304 |
AF415759 |
Salmonella enterica 148 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
305 |
AF415758 |
Salmonella enterica 147 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
306 |
AF415757 |
Salmonella enterica 146 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
307 |
AF415756 |
Salmonella enterica 145 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
308 |
AF415755 |
Salmonella enterica 144 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
309 |
AF415754 |
Salmonella enterica 143 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
310 |
AF415753 |
Salmonella enterica 142 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
311 |
AF415752 |
Salmonella enterica 141 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
312 |
AF415751 |
Salmonella enterica 140 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
313 |
AF415873 |
Salmonella enterica 14-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
314 |
AF415750 |
Salmonella enterica 139 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
315 |
AF415749 |
Salmonella enterica 138 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
316 |
AF415748 |
Salmonella enterica 136 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
317 |
AF415747 |
Salmonella enterica 135 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
318 |
AF415746 |
Salmonella enterica 133 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
319 |
AF415745 |
Salmonella enterica 132 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
320 |
AF415744 |
Salmonella enterica 131 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
321 |
AF415743 |
Salmonella enterica 130 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
322 |
AF415872 |
Salmonella enterica 13-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
323 |
AF415704 |
Salmonella enterica 129 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
324 |
AF415840 |
Salmonella enterica 128 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
325 |
AF415742 |
Salmonella enterica 127 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
326 |
AF415741 |
Salmonella enterica 126 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
327 |
AF415740 |
Salmonella enterica 125 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
328 |
AF415739 |
Salmonella enterica 124 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
329 |
AF415703 |
Salmonella enterica 123 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
330 |
AF415738 |
Salmonella enterica 122 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
331 |
AF415702 |
Salmonella enterica 121 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
332 |
AF415737 |
Salmonella enterica 120 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
333 |
AF415736 |
Salmonella enterica 119 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
334 |
AF415735 |
Salmonella enterica 118 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
335 |
AF415701 |
Salmonella enterica 117 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
336 |
AF415859 |
Salmonella enterica 116 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
337 |
AF415858 |
Salmonella enterica 115 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
338 |
AF415857 |
Salmonella enterica 114 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
339 |
AF415813 |
Salmonella enterica 113 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
340 |
AF415856 |
Salmonella enterica 112 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
341 |
AF415855 |
Salmonella enterica 111 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
342 |
AF415910 |
Salmonella enterica 110 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
343 |
AF415833 |
Salmonella enterica 11 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
344 |
AF415909 |
Salmonella enterica 109 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
345 |
AF415869 |
Salmonella enterica 108 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
346 |
AF415868 |
Salmonella enterica 107 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
347 |
AF415711 |
Salmonella enterica 106 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
348 |
AF415734 |
Salmonella enterica 104 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
349 |
AF415733 |
Salmonella enterica 102 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
350 |
AF415908 |
Salmonella enterica 101 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
No. |
Accession |
Organism |
Out of range |
No match |
Score sum |
Max. score |
% Similarity |
|
351 |
AF415812 |
Salmonella enterica 10-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
352 |
AF415815 |
Salmonella enterica 1-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
353 |
AF260282 |
Rhizobium tropici PRSFG 9 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
354 |
AF260296 |
Rhizobium tropici PRSFG 29 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
355 |
AY117614 |
Rhizobium sp. ISP3 ISP3 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
356 |
AJ506795 |
Klebsiella sp. K2-1 K2-1 |
4 |
0 |
9.00 |
9.00 |
100 % |
|
357 |
AY102881 |
uncultured bacterium |
3 |
1 |
9.00 |
10.00 |
90 % |
|
358 |
AY043385 |
Serratia marcescens AU664 |
3 |
1 |
9.00 |
10.00 |
90 % |
|
359 |
AF452128 |
Ochrobactrum sp. LMG 20564 LMG 20564 |
3 |
1 |
9.00 |
10.00 |
90 % |
|
360 |
AF501340 |
Ochrobactrum anthropi HAMBI2402 |
3 |
1 |
9.00 |
10.00 |
90 % |
|
361 |
X80734 |
Escherichia vulneris ATCC 33821T |
3 |
1 |
9.00 |
10.00 |
90 % |
|
362 |
AF530475 |
Escherichia fergusonii ATCC 35469 |
3 |
1 |
9.00 |
10.00 |
90 % |
|
363 |
AY043392 |
Escherichia coli AU1713 |
3 |
1 |
9.00 |
10.00 |
90 % |
|
364 |
X80725 |
Escherichia coli ATCC 11775T |
3 |
1 |
9.00 |
10.00 |
90 % |
|
365 |
AJ567607 |
Escherichia coli |
3 |
1 |
9.00 |
10.00 |
90 % |
|
366 |
AB075693 |
Escherichia coli |
3 |
1 |
9.00 |
10.00 |
90 % |
|
367 |
AF373199 |
Erwinia chrysanthemi 571 |
3 |
1 |
9.00 |
10.00 |
90 % |
|
368 |
AF141892 |
Erwinia amylovora BC201(=Ea510) |
3 |
1 |
9.00 |
10.00 |
90 % |
|
369 |
AJ489826 |
Enterobacteriaceae bacterium CF01Ent-1 |
3 |
1 |
9.00 |
10.00 |
90 % |
|
370 |
AF520711 |
Dickeya zeae |
3 |
1 |
9.00 |
10.00 |
90 % |
|
371 |
AB086230 |
Cedecea neteri GTC1717 |
3 |
1 |
9.00 |
10.00 |
90 % |
|
372 |
AF529354 |
uncultured gamma proteobacterium |
2 |
2 |
9.00 |
11.00 |
82 % |
|
373 |
AF529347 |
uncultured gamma proteobacterium |
2 |
2 |
9.00 |
11.00 |
82 % |
|
374 |
AF422669 |
uncultured bacterium |
2 |
2 |
9.00 |
11.00 |
82 % |
|
375 |
AF422665 |
uncultured bacterium |
2 |
2 |
9.00 |
11.00 |
82 % |
|
376 |
AF422650 |
uncultured bacterium |
2 |
2 |
9.00 |
11.00 |
82 % |
|
377 |
AF422639 |
uncultured bacterium |
2 |
2 |
9.00 |
11.00 |
82 % |
|
378 |
AY135895 |
uncultured bacterium |
2 |
2 |
9.00 |
11.00 |
82 % |
|
379 |
AY048885 |
uncultured bacterium |
2 |
2 |
9.00 |
11.00 |
82 % |
|
380 |
AF058375 |
uncultured Escherichia clone MT9 |
2 |
2 |
9.00 |
11.00 |
82 % |
|
381 |
AJ295456 |
rape rhizosphere bacterium tsb085 Bacteria |
2 |
2 |
9.00 |
11.00 |
82 % |
|
382 |
AY043386 |
Serratia marcescens AU736 |
2 |
2 |
9.00 |
11.00 |
82 % |
|
383 |
AY043389 |
Serratia marcescens AU1388 |
2 |
2 |
9.00 |
11.00 |
82 % |
|
384 |
AY043388 |
Serratia marcescens AU1285 |
2 |
2 |
9.00 |
11.00 |
82 % |
|
385 |
AY043387 |
Serratia marcescens AU1209 |
2 |
2 |
9.00 |
11.00 |
82 % |
|
386 |
AF533354 |
Roseomonas fauriae ATCC 49958 |
2 |
2 |
9.00 |
11.00 |
82 % |
|
387 |
AB045731 |
Escherichia coli MPEC Y-69 |
2 |
2 |
9.00 |
11.00 |
82 % |
|
388 |
AB045730 |
Escherichia coli MPEC EX-33 |
2 |
2 |
9.00 |
11.00 |
82 % |
|
389 |
AY319394 |
Escherichia coli 5.4 |
2 |
2 |
9.00 |
11.00 |
82 % |
|
390 |
AY131237 |
Erwinia papayae CFBP 11606 |
2 |
2 |
9.00 |
11.00 |
82 % |
|
391 |
AF513469 |
Enterobacteriaceae bacterium PH31 PH31 |
2 |
2 |
9.00 |
11.00 |
82 % |
|
392 |
AF025373 |
Citrobacter werkmanii CDC 0876-58 |
2 |
2 |
9.00 |
11.00 |
82 % |
|
393 |
AF025364 |
Citrobacter sedlakii CDC 4696-86 |
2 |
2 |
9.00 |
11.00 |
82 % |
|
394 |
AB074628 |
uncultured alpha proteobacterium |
1 |
3 |
9.00 |
12.00 |
75 % |
|
395 |
AF373198 |
Pantoea stewartii subsp. stewartii GSPB 2626 |
1 |
3 |
9.00 |
12.00 |
75 % |
|
396 |
AF482682 |
Agrobacterium sp. PB PB |
1 |
3 |
9.00 |
12.00 |
75 % |
|
397 |
AY117668 |
Rhizobium sp. PRF84 PRF84 |
2 |
1 |
9.00 |
11.00 |
82 % |
|
398 |
AF481815 |
uncultured bacterium |
3 |
0 |
8.50 |
10.00 |
85 % |
|
399 |
AF233451 |
Escherichia coli |
3 |
0 |
8.50 |
10.00 |
85 % |
|
400 |
A14565 |
Escherichia coli |
3 |
0 |
8.50 |
10.00 |
85 % |
|
No. |
Accession |
Organism |
Out of range |
No match |
Score sum |
Max. score |
% Similarity |
|
401 |
AF513468 |
Enterobacteriaceae bacterium PH29 PH29 |
2 |
1 |
8.50 |
11.00 |
77 % |
|
402 |
AJ508303 |
Enterobacter cowanii type strain: CIP 107300 |
2 |
1 |
8.50 |
11.00 |
77 % |
|
403 |
M25051 |
Escherichia coli |
3 |
1 |
8.00 |
10.00 |
80 % |
|
404 |
AY064412 |
Rhizobium sp. OmegaB OmegaB |
2 |
2 |
8.00 |
11.00 |
73 % |
|
405 |
AF441935 |
uncultured gamma proteobacterium |
5 |
0 |
8.00 |
8.00 |
100 % |
|
406 |
AF498720 |
bacterium Ellin338 |
5 |
0 |
8.00 |
8.00 |
100 % |
|
407 |
AF415894 |
Salmonella enterica 61 |
5 |
0 |
8.00 |
8.00 |
100 % |
|
408 |
AJ310685 |
uncultured proteobacterium |
4 |
1 |
8.00 |
9.00 |
89 % |
|
409 |
AJ310684 |
uncultured proteobacterium |
4 |
1 |
8.00 |
9.00 |
89 % |
|
410 |
AJ310683 |
uncultured proteobacterium |
4 |
1 |
8.00 |
9.00 |
89 % |
|
411 |
AJ310682 |
uncultured proteobacterium |
4 |
1 |
8.00 |
9.00 |
89 % |
|
412 |
AJ310681 |
uncultured proteobacterium |
4 |
1 |
8.00 |
9.00 |
89 % |
|
413 |
AJ310680 |
uncultured proteobacterium |
4 |
1 |
8.00 |
9.00 |
89 % |
|
414 |
AY135890 |
uncultured bacterium |
4 |
1 |
8.00 |
9.00 |
89 % |
|
415 |
AF511524 |
Serratia sp. BuxOS3 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
416 |
AF286867 |
Serratia quinovorans LMG 7887 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
417 |
AJ279051 |
Serratia quinovorans CP6g |
4 |
1 |
8.00 |
9.00 |
89 % |
|
418 |
AJ279049 |
Serratia quinovorans CP6e |
4 |
1 |
8.00 |
9.00 |
89 % |
|
419 |
AJ279046 |
Serratia quinovorans CP6b |
4 |
1 |
8.00 |
9.00 |
89 % |
|
420 |
AY040208 |
Serratia proteamaculans |
4 |
1 |
8.00 |
9.00 |
89 % |
|
421 |
AF286871 |
Serratia plymuthica DSM 49 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
422 |
AF286870 |
Serratia odorifera DSM 4582 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
423 |
AF286868 |
Serratia grimesii LMG 7883 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
424 |
AF373195 |
Pectobacterium carotovorum subsp. wasabiae 93 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
425 |
AF373194 |
Pectobacterium carotovorum subsp. wasabiae 92 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
426 |
AF373193 |
Pectobacterium carotovorum subsp. wasabiae 91 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
427 |
AF373192 |
Pectobacterium carotovorum subsp. odoriferum 1880 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
428 |
AF373191 |
Pectobacterium carotovorum subsp. odoriferum 1878 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
429 |
AF373190 |
Pectobacterium carotovorum subsp. odoriferum 1645-1 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
430 |
AF373186 |
Pectobacterium carotovorum subsp. carotovorum GSPB 2806 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
431 |
AF373184 |
Pectobacterium carotovorum subsp. betavasculorum 29 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
432 |
AF373176 |
Pectobacterium carotovorum subsp. atrosepticum GSPB 1710 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
433 |
AF373182 |
Pectobacterium carotovorum subsp. atrosepticum 9205 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
434 |
AF373181 |
Pectobacterium carotovorum subsp. atrosepticum 9204 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
435 |
AF373180 |
Pectobacterium carotovorum subsp. atrosepticum 9201 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
436 |
AF373178 |
Pectobacterium carotovorum subsp. atrosepticum 31 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
437 |
AF373177 |
Pectobacterium carotovorum subsp. atrosepticum 196 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
438 |
AJ506794 |
Pantoea agglomerans MY1 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
439 |
AJ489355 |
Enterobacter sp. Lgg10.16 Lgg10.16 |
4 |
1 |
8.00 |
9.00 |
89 % |
|
440 |
AJ487023 |
uncultured bacterium |
3 |
2 |
8.00 |
10.00 |
80 % |
|
441 |
AF441726 |
alpha proteobacterium Kaza-27 Kaza-27 |
3 |
2 |
8.00 |
10.00 |
80 % |
|
442 |
AF522294 |
Xenorhabdus nematophila CB6 |
3 |
2 |
8.00 |
10.00 |
80 % |
|
443 |
AF373189 |
Pectobacterium carotovorum subsp. carotovorum E161 |
3 |
2 |
8.00 |
10.00 |
80 % |
|
444 |
AF373188 |
Pectobacterium carotovorum subsp. carotovorum E155 |
3 |
2 |
8.00 |
10.00 |
80 % |
|
445 |
AF373187 |
Pectobacterium carotovorum subsp. carotovorum 441 |
3 |
2 |
8.00 |
10.00 |
80 % |
|
446 |
AF373185 |
Pectobacterium carotovorum subsp. carotovorum 21 |
3 |
2 |
8.00 |
10.00 |
80 % |
|
447 |
AF373183 |
Pectobacterium carotovorum subsp. atrosepticum E1 |
3 |
2 |
8.00 |
10.00 |
80 % |
|
448 |
AJ489345 |
Erwinia sp. Lgg10.4 Lgg10.4 |
3 |
2 |
8.00 |
10.00 |
80 % |
|
449 |
AF373174 |
Erwinia chrysanthemi GSPB 413 |
3 |
2 |
8.00 |
10.00 |
80 % |
|
450 |
AF373201 |
Erwinia chrysanthemi 573 |
3 |
2 |
8.00 |
10.00 |
80 % |
|
No. |
Accession |
Organism |
Out of range |
No match |
Score sum |
Max. score |
% Similarity |
|
451 |
AF520709 |
Erwinia chrysanthemi |
3 |
2 |
8.00 |
10.00 |
80 % |
|
452 |
AF520712 |
Dickeya dieffenbachiae |
3 |
2 |
8.00 |
10.00 |
80 % |
|
453 |
AF234721 |
uncultured sludge bacterium A7 |
2 |
3 |
8.00 |
11.00 |
73 % |
|
454 |
2 |
3 |
8.00 |
11.00 |
73 % |
||
|
455 |
2 |
3 |
8.00 |
11.00 |
73 % |
||
|
456 |
2 |
3 |
8.00 |
11.00 |
73 % |
||
|
457 |
2 |
3 |
8.00 |
11.00 |
73 % |
||
|
458 |
AF529356 |
uncultured gamma proteobacterium |
2 |
3 |
8.00 |
11.00 |
73 % |
|
459 |
AF529337 |
uncultured gamma proteobacterium |
2 |
3 |
8.00 |
11.00 |
73 % |
|
460 |
AF529100 |
uncultured gamma proteobacterium |
2 |
3 |
8.00 |
11.00 |
73 % |
|
461 |
AF422681 |
uncultured bacterium |
2 |
3 |
8.00 |
11.00 |
73 % |
|
462 |
AY135901 |
uncultured bacterium |
2 |
3 |
8.00 |
11.00 |
73 % |
|
463 |
AY038487 |
uncultured bacterium |
2 |
3 |
8.00 |
11.00 |
73 % |
|
464 |
AY043640 |
uncultured alpha proteobacterium |
2 |
3 |
8.00 |
11.00 |
73 % |
|
465 |
AY043618 |
uncultured alpha proteobacterium |
2 |
3 |
8.00 |
11.00 |
73 % |
|
466 |
AJ532705 |
uncultured alpha proteobacterium |
2 |
3 |
8.00 |
11.00 |
73 % |
|
467 |
2 |
3 |
8.00 |
11.00 |
73 % |
||
|
468 |
AF025852 |
Rhizobium huautlense SO2 (type strain) |
2 |
3 |
8.00 |
11.00 |
73 % |
|
469 |
AY077753 |
Obesumbacterium proteus |
2 |
3 |
8.00 |
11.00 |
73 % |
|
470 |
AY217654 |
Escherichia senegalensis F1p |
2 |
3 |
8.00 |
11.00 |
73 % |
|
471 |
AF501346 |
Devosia riboflavina HAMBI2401 |
2 |
3 |
8.00 |
11.00 |
73 % |
|
472 |
AF406666 |
Agrobacterium tumefaciens A17 |
2 |
3 |
8.00 |
11.00 |
73 % |
|
473 |
AJ514439 |
uncultured bacterium |
3 |
0 |
8.00 |
10.00 |
80 % |
|
474 |
AY133103 |
uncultured alpha proteobacterium |
2 |
1 |
8.00 |
11.00 |
73 % |
|
475 |
AY024335 |
Sinorhizobium morelense Lc04 |
2 |
1 |
8.00 |
11.00 |
73 % |
|
476 |
3 |
1 |
7.75 |
10.00 |
78 % |
||
|
477 |
AJ277980 |
Escherichia fergusonii WG 167 |
3 |
2 |
7.25 |
10.00 |
73 % |
|
478 |
AY325749 |
uncultured Escherichia sp |
4 |
0 |
7.00 |
9.00 |
78 % |
|
479 |
AY038420 |
uncultured gamma proteobacterium |
6 |
0 |
7.00 |
7.00 |
100 % |
|
480 |
AJ489370 |
Pectobacterium sp. Lgg15.14 Lgg15.14 |
5 |
1 |
7.00 |
8.00 |
88 % |
|
481 |
AJ489369 |
Pectobacterium sp. Lgg15.13 Lgg15.13 |
5 |
1 |
7.00 |
8.00 |
88 % |
|
482 |
AF186438 |
uncultured sponge symbiont PAUC53 |
4 |
2 |
7.00 |
9.00 |
78 % |
|
483 |
AF365508 |
uncultured bacterium |
4 |
2 |
7.00 |
9.00 |
78 % |
|
484 |
AY039439 |
earthworm cast bacterium C11D1 Bacteria C11D1 |
4 |
2 |
7.00 |
9.00 |
78 % |
|
485 |
4 |
2 |
7.00 |
9.00 |
78 % |
||
|
486 |
AF373179 |
Pectobacterium carotovorum subsp. atrosepticum 558 |
4 |
2 |
7.00 |
9.00 |
78 % |
|
487 |
AF365713 |
uncultured bacterium |
3 |
3 |
7.00 |
10.00 |
70 % |
|
488 |
AF431126 |
uncultured alpha proteobacterium |
3 |
3 |
7.00 |
10.00 |
70 % |
|
489 |
AB042502 |
halophilic bacterium TAG C7 TAG C7 |
3 |
3 |
7.00 |
10.00 |
70 % |
|
490 |
AJ279050 |
Serratia quinovorans CP6f |
3 |
3 |
7.00 |
10.00 |
70 % |
|
491 |
3 |
3 |
7.00 |
10.00 |
70 % |
||
|
492 |
AF516882 |
Mesorhizobium plurifarium subsp. americum Ls38 |
3 |
3 |
7.00 |
10.00 |
70 % |
|
493 |
3 |
3 |
7.00 |
10.00 |
70 % |
||
|
494 |
3 |
3 |
7.00 |
10.00 |
70 % |
||
|
495 |
AF508099 |
Agrobacterium tumefaciens |
3 |
3 |
7.00 |
10.00 |
70 % |
|
496 |
AF508098 |
Agrobacterium tumefaciens |
3 |
3 |
7.00 |
10.00 |
70 % |
|
497 |
AF508097 |
Agrobacterium tumefaciens |
3 |
3 |
7.00 |
10.00 |
70 % |
|
498 |
AF508096 |
Agrobacterium tumefaciens |
3 |
3 |
7.00 |
10.00 |
70 % |
|
499 |
AF522927 |
uncultured bacterium |
4 |
0 |
6.50 |
9.00 |
72 % |
|
500 |
AJ279053 |
Serratia quinovorans PC1 |
4 |
1 |
6.50 |
9.00 |
72 % |
|
No. |
Accession |
Organism |
Out of range |
No match |
Score sum |
Max. score |
% Similarity |
|
501 |
AY100686 |
marine bacterium Gu4 Gu4 |
4 |
2 |
6.50 |
9.00 |
72 % |
|
502 |
AF000620 |
Sinorhizobium meliloti WSM419 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
503 |
AF000619 |
Rhizobium tropici YL81 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
504 |
AF000618 |
Rhizobium tropici WA32 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
505 |
AF466174 |
Rhizobium tropici UPM1152 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
506 |
AF000616 |
Rhizobium tropici BDT122 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
507 |
AF469905 |
Rhizobium sp. SSR336 SSR336 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
508 |
AF469899 |
Rhizobium sp. SSR312 SSR312 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
509 |
AF469898 |
Rhizobium sp. SSR302 SSR302 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
510 |
AF469897 |
Rhizobium sp. SSR301 SSR301 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
511 |
AF469902 |
Rhizobium sp. SAR617 SAR617 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
512 |
AF469901 |
Rhizobium sp. SAR611 SAR611 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
513 |
AF469900 |
Rhizobium sp. SAR610 SAR610 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
514 |
AY072787 |
Rhizobium leguminosarum bv. viciae UPM791 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
515 |
AF000612 |
Rhizobium leguminosarum bv. phaseoli COO23 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
516 |
AY117578 |
Kluyvera sp. DV48 DV48 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
517 |
Z47359 |
Escherichia coli 2348/69 EPEC, 127:H6 |
7 |
0 |
6.00 |
6.00 |
100 % |
|
518 |
AJ404541 |
Escherichia coli |
7 |
0 |
6.00 |
6.00 |
100 % |
|
519 |
AJ404540 |
Escherichia coli |
7 |
0 |
6.00 |
6.00 |
100 % |
|
520 |
AF431337 |
uncultured gamma proteobacterium |
6 |
1 |
6.00 |
7.00 |
86 % |
|
521 |
6 |
1 |
6.00 |
7.00 |
86 % |
||
|
522 |
AF000613 |
Rhizobium leguminosarum bv. phaseoli PORA44 |
6 |
1 |
6.00 |
7.00 |
86 % |
|
523 |
AF325147 |
Pseudoalteromonas sp. D23 D23 |
6 |
1 |
6.00 |
7.00 |
86 % |
|
524 |
AJ404543 |
Escherichia coli |
6 |
1 |
6.00 |
7.00 |
86 % |
|
525 |
5 |
2 |
6.00 |
8.00 |
75 % |
||
|
526 |
AF373202 |
Erwinia chrysanthemi 580 |
5 |
2 |
6.00 |
8.00 |
75 % |
|
527 |
AF520708 |
Dickeya dianthicola CFBP 1200 |
5 |
2 |
6.00 |
8.00 |
75 % |
|
528 |
5 |
2 |
6.00 |
8.00 |
75 % |
||
|
529 |
AB070833 |
Rhizobium sp. PDA-2 PDA-2 |
7 |
0 |
5.00 |
6.00 |
83 % |
|
530 |
AF000617 |
Rhizobium tropici LCL51 |
8 |
0 |
5.00 |
5.00 |
100 % |
|
531 |
AF000611 |
Rhizobium leguminosarum bv. phaseoli COO14 |
8 |
0 |
5.00 |
5.00 |
100 % |
|
532 |
AF000610 |
Rhizobium leguminosarum bv. phaseoli BDLN116 |
8 |
0 |
5.00 |
5.00 |
100 % |
|
533 |
AY301082 |
Escherichia coli TA79 |
8 |
0 |
5.00 |
5.00 |
100 % |
|
534 |
AY301081 |
Escherichia coli TA57 |
8 |
0 |
5.00 |
5.00 |
100 % |
|
535 |
AY301080 |
Escherichia coli TA479 |
8 |
0 |
5.00 |
5.00 |
100 % |
|
536 |
AY301079 |
Escherichia coli TA234 |
8 |
0 |
5.00 |
5.00 |
100 % |
|
537 |
AY301083 |
Escherichia coli TA184 |
8 |
0 |
5.00 |
5.00 |
100 % |
|
538 |
AY301078 |
Escherichia coli TA157 |
8 |
0 |
5.00 |
5.00 |
100 % |
|
539 |
AJ404542 |
Escherichia coli |
8 |
0 |
5.00 |
5.00 |
100 % |
|
540 |
AF432320 |
uncultured gamma proteobacterium |
7 |
1 |
5.00 |
6.00 |
83 % |
|
541 |
AF000614 |
Rhizobium leguminosarum bv. phaseoli PORB21 |
7 |
1 |
5.00 |
6.00 |
83 % |